BAC Information

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BAC

Clone NameMSMg01-185A08
Chromosome5 (Build37)
Map Location 7,923,605 - 7,923,915
singlet/doubletsinglet
Overlap geneEG546855
Upstream geneLOC100042651, 4921511H03Rik, LOC242823, LOC667767
Downstream geneSteap4, Sri, LOC433840, Adam22, Dbf4, Slc25a40, Gm440, Abcb1a, EG330031, Abcb1b, Abcb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185A08.T7 (MSMg01no185_a08.b1)MSMg01-185A08.TJ (MSMg01no185_a08.g1)
ACCAG377134AG377135
length675735
length of high quality
(start - end)
326 (9 - 334)290 (446 - 735)
definitionCHROMAT_FILE: MSMg01no185_a08.b1 PHD_FILE: MSMg01no185_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:37 2005CHROMAT_FILE: MSMg01no185_a08.g1 PHD_FILE: MSMg01no185_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTCCTATAGGGAGAGGATCCGCGGAATTCAGTGTTAAACTCAACTTCAG
AATTAATCCACCCAACCCTTTGGCTATTTATCCATGAGCTCTAAGGCACT
GGAAGGCTTCTCCAGGGTGGCAAGAGGCCAGGCATTGTAGCAGACATTGG
CAATTAGAAGTCTCTTAGGGAAGCTAGAACCAAGAAGGCCACTCTTTGCA
ACTGGTGTTTCTTTAACTCTTTGGACAAGACCAAACAGGCGGCACTTGGC
AGAGGGAGAGAACACCCAGACTGCAGAGACTGAGGCCTGTGATCACATGT
ACAAGAGATTAGCATGGCTGCATTCAAACTACTATTATCTCACCCCACCC
CGCCTCCAGAGACACCAGCTTCAGTGGCCAATCCATGGAAGCATACAAGA
AGATCCTGTCCTCAGACACTTTGGAAGAGTTTCAAGAGATGAGTAAGAGT
ATGTGGAAGAAACTGCAAGAGAAGTTTGCGGGCACAAGGCCTGAGGAGAA
GCATAAAGTCTAAGCTCAGGTCCTGTCCTGCCCATGTACCTGATCATTAG
AATCTTCTGATGCTCATCGATTAAACTGCCTGGTTTCTTCCCCCACCCCC
AAAAGTCTCTTAGGACAACAAGAATTGGTAAGTCCCAAGGATAGTTATAG
GACATAGTATAAACTCATGAACCCC
CCTTCTTTTNNNNCTTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAG
CTATGAGCCACATTTTTAATGGGGTTATTTGATTTCCCCCAGTCCACCTT
CTTGAGTTCTTTATATATATTGGATAATAGTCCCCTATCTGATTTAGGAT
AGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCATTTTGTCTTATTGACG
GTGTCTTTTGCCTTGCAGAAGCTTTGCAACTTTATGAGGTCCCATTTATC
GATTCTCGATCTTTCAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTT
CACCTGTACCCATATCTTCGAGGTTTTTTTTTACTCTCCCCTCTCTAAGT
TTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAACCCACATAAATTTGAC
CTTAGTACAAGGAGATAGGAATGGATCAATCCATATTCTTCTACATGATA
ACCGCCAGTTGTGCCGGGACCATTTGTTGAAAATGCTCTATTTTTCCACT
GGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGTGTGGG
TTCATCTCTGGGTCTTCAATTCTATTTCATTGGTCTACTTCTCTGTTGCT
ATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTAAAGCTTTA
GGACAGGCATGATGATTCCACCAGAAGTACTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_a08.b1 MSMg01no185_a08.b1 CHROMAT_FILE:
MSMg01no185_a08.b1 PHD_FILE: MSMg01no185_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:37 2005
         (326 letters)



>mm_chr5_7923390_7924115
          Length = 726

 Score =  594 bits (307), Expect = e-174
 Identities = 310/311 (99%)
 Strand = Plus / Plus

                                                                       
Query: 16  ggaattcagtgttaaactcaacttcagaattaatccacccaaccctttggctatttatcc 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 ggaattcagtgttaaactcaacttcagaattaatccacccaaccctttggctatttatcc 275

                                                                       
Query: 76  atgagctctaaggcactggaaggcttctccagggtggcaagaggccaggcattgtagcag 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 atgagctctaaggcactggaaggcttctccagggtggcaagaggccaggcattgtagcag 335

                                                                       
Query: 136 acattggcaattagaagtctcttagggaagctagaaccaagaaggccactctttgcaact 195
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 336 acattggcaattagaagtctcttagggaagctaggaccaagaaggccactctttgcaact 395

                                                                       
Query: 196 ggtgtttctttaactctttggacaagaccaaacaggcggcacttggcagagggagagaac 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ggtgtttctttaactctttggacaagaccaaacaggcggcacttggcagagggagagaac 455

                                                                       
Query: 256 acccagactgcagagactgaggcctgtgatcacatgtacaagagattagcatggctgcat 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 acccagactgcagagactgaggcctgtgatcacatgtacaagagattagcatggctgcat 515

                      
Query: 316 tcaaactacta 326
           |||||||||||
Sbjct: 516 tcaaactacta 526


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)