BAC Information

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BAC

Clone NameMSMg01-185G24
Chromosome5 (Build37)
Map Location 86,024,828 - 86,025,121
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185G24.T7 (MSMg01no185_g24.b1)MSMg01-185G24.TJ (MSMg01no185_g24.g1)
ACCAG377433AG377434
length713763
length of high quality
(start - end)
315 (46 - 360)294 (89 - 382)
definitionCHROMAT_FILE: MSMg01no185_g24.b1 PHD_FILE: MSMg01no185_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:08 2005CHROMAT_FILE: MSMg01no185_g24.g1 PHD_FILE: MSMg01no185_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCAAATGGATCAAAGTTCTAAATGTAAAACCTAAAACTATATTA
TATAAGTGGAGGAAGAGATTGTCAGGATAGTATCCCATTTATTCAGGAAA
TGAGTCAACAATGCCCCTCCCACACAGGGCCAAAATTATCTAATAAAATT
CCCAACATCAGCCCTCTTTTGAACTGCAGGTCAGTGTTGTCCTGAAGGCT
TTCAAATCTCTCAGGCAAGACCTGGGTATGAAGAGCTGTGACACAAGGTC
AGCTGCAGCACAGATGAAAACCACCAGAAGGATCCTGTCCCAGGCTGCTT
CTCGATTCTGTGTTCCCTACCGCTCCGCCTGGGTTCCTCAGAGCAGAAGT
GGCAGTCCTAGCTGCGCCCACAGGAAGGACCAGCTCTCTCCTGTTGGTAC
CCGGGTATGGAGAGCTGTGGCACAGGGTCAGCTCAGGGTACAGAAGGGAA
CCGGAAGTTTAAGGAGTGTTTTTGACTTAAAATTAGGCACAATCTATCAG
ACATAGAAAAGTCATTTAAAGAGCATTTATTTTAATTTCATCAATTTTGT
ATAACACAGTGAATTTATATGTAGCTTTATAATCTTTACCTATTCAGATA
GCTGTTAATGTGAACAACTGCTGGAAGCCTTTGTCTGTCATAATGTGTAA
TTGTAAATACCCG
NCCCCCCCCNNCCTCGATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCAGGTAGGTG
GCATGTGTGTCAGGGACTTTCAGGTTTTCTAGTACTTTGAAAATTTCACA
CGATCTGTTACTGAAGAACCTTCCAAGAACTTTGCACTAAAGGAAACACT
GTGCCAATTAAAGATTTAGCTTTTAGTTTGATCTCTGTATACAAGAGCTG
GATGATATTTGGAGAGTTTTAGCTAATCTTTGTATATCTGTTAAAATAAT
TTAATAAAATAGAAAAAGTAATATAAAGATAAGTAGAGGCAGCAGTCTAC
ATTATATAACTATGATGATATATATGTATATATTATCATACCCCGCCCCC
CTAAATTTTGTATGCAATTTATGTCATTTTGATTGCCCCCCCACACATAA
AAACCTTTCAATGCTTTGAAAACAGGGTGCACCTTACACTTCCATGTTCT
GACTTCTCAAGTGTGAGACATGTGGGTGCTTATATATGTATGCATTTTTC
ATGTCATTTTGCAAATACTTTCTTTTATTTCCTCCAATGTTCGCCTGTTT
CCCGTTCATTATCGCTACCTATTTCTCCTTTTCAACCTCCTTAGTTCGTA
CCTTTCTTTCCTCTTTTTTTTATTTCCCACTTATATTTCTTCCCTTATAT
ATCATACACTCCAACTTTCCCTTTCTTCTTTACCTACTATTCTTTACATT
CCACTTCACCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_g24.g1 MSMg01no185_g24.g1 CHROMAT_FILE:
MSMg01no185_g24.g1 PHD_FILE: MSMg01no185_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:08 2005
         (294 letters)



>mm_chr5_86024720_86025413
          Length = 694

 Score =  569 bits (294), Expect = e-167
 Identities = 294/294 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcaggtaggtggcatgtgtgtcagggactttcaggttttctagtactttgaaaatttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 agcaggtaggtggcatgtgtgtcagggactttcaggttttctagtactttgaaaatttca 343

                                                                       
Query: 61  cacgatctgttactgaagaaccttccaagaactttgcactaaaggaaacactgtgccaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 cacgatctgttactgaagaaccttccaagaactttgcactaaaggaaacactgtgccaat 283

                                                                       
Query: 121 taaagatttagcttttagtttgatctctgtatacaagagctggatgatatttggagagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 taaagatttagcttttagtttgatctctgtatacaagagctggatgatatttggagagtt 223

                                                                       
Query: 181 ttagctaatctttgtatatctgttaaaataatttaataaaatagaaaaagtaatataaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ttagctaatctttgtatatctgttaaaataatttaataaaatagaaaaagtaatataaag 163

                                                                 
Query: 241 ataagtagaggcagcagtctacattatataactatgatgatatatatgtatata 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 ataagtagaggcagcagtctacattatataactatgatgatatatatgtatata 109


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)