BAC Information

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BAC

Clone NameMSMg01-185M11
Chromosome5 (Build37)
Map Location 142,081,515 - 142,081,785
singlet/doubletsinglet
Overlap genenone
Upstream geneLfng, Ttyh3, Iqce, AA881470, 6530401C20Rik, Gna12, Card11, LOC623466
Downstream geneSdk1, LOC666727, Foxk1, C330006K01Rik, D930005D10Rik, Papolb, Mmd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185M11.T7 (MSMg01no185_m11.b1)MSMg01-185M11.TJ (MSMg01no185_m11.g1)
ACCAG377663AG377664
length792752
length of high quality
(start - end)
268 (104 - 371)236 (56 - 291)
definitionCHROMAT_FILE: MSMg01no185_m11.b1 PHD_FILE: MSMg01no185_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:34 2005CHROMAT_FILE: MSMg01no185_m11.g1 PHD_FILE: MSMg01no185_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGTCTTGTTCCCCNNNTTNTNNTTCTTTTTCCATCTTTGGTTAAAACCCC
CNCCCCCTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCTGCACAAATTATGTTCACCTAACAGATGGGAGTGTT
CGTTGTGAGCCCACTGTTTATAAACACACATTTTTAAGCAGGGAACATTT
CCTGGCTCATTCTAGGAAGGTATGATAAAATCGTGGTACCATATGTTGCT
CAAACACAAGCATCTCTCGCTCCTACTCTGGACAACACTGAGCCAGTGTG
TGAATGTACAACACCAAGGGGGGGTTGGGTAGACCAACACAGCACTCTCC
AGGACAACAGAGCACCAGATCCCTATCAAGGCCAGGAATGAGAGGGTCAT
GTCAGCTGGTTTATTTTTTTTTCCCCACCCACCGATACAGCTTAAACCTC
CATTAGAACTACCCAATGCTCCCCCCACAAAGAATCTTCAGGTCACAAAT
CCCTTCCAGTCTGCCCCAGTATCAGGTCACCCTGTGCTCAGAGTCTGCGG
AAACCCCCACGGTTTCTCTGAGCACTCTTCATGGTATCTTAGGACTTCTG
GTGAGTGGAACGCAATTTGTGCCATTAACTAAGTTAGATATTCAGATATC
TGTTCACCTTCTCTGCCCAAATAAAGTTTGCTCTGTTTTTATCCCGTTTC
GTTTCTCTGAAATTTATCCACGATCTATTATCCCTACTTATTGTCCGATC
TTTTGTTTTATAATCCACTAACTTTCCCACTTTTTCCCAAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCTTCCCTTTCTGTTTTATGGGATAGCTTTGTGTAAGCTTTACTCA
CAAGGCCTGGTAGGACTCAGTGATGAATCCATCTGGACTCCTTTTGCAGC
TGAGATTTTTTTAAATGTCTGCTCCACTCAGTGCTTGCTGTAGTTCTGTT
TAAGGTGGTTATCTTGGTTTATCTTGGTTTGATTTGTGGNTTAATTATGC
ATCTATAAATATATCAATTTCTTTTTAGGTTTTTCTAATATACTGTTTAT
AGAAGTTTTTAAGATCTTCTCTCCCAAATTTTTTTTTTTTTTTCCCCCCC
CCCCCCCCCTCTCTGNCCTTCTCCTCCCCCCTTTGTTTTTCCCCCCCCCT
TAAAAAAAAAAAAAAACTACGCCTTCGGCTCTTCCCTTTTTTTCTTTCCC
CCCTCTTTTTTTCCTCCTATATATATTACCCCAACCAAACTTTGATTACC
NCCCNCCNCACACCCCACACCCCCCCCCCNCAACCCCCCACCTANAGACC
CAACACANCCCCACCCAAAAAACCACACCCACTACACAGCCCCNCTTCTC
CCCTTGGTAANCNCTCNCTATTTTGNCCACNACNCCCCCCCACCACTAAA
CCACCCCCATGCAACGACACCACACANTCATGCTCCCCCCCAAATCCCCA
ATTACTATCTATATTTTTTATATTCCCCCATAATTTACCTTTCTCCTTAT
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_m11.b1 MSMg01no185_m11.b1 CHROMAT_FILE:
MSMg01no185_m11.b1 PHD_FILE: MSMg01no185_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:34 2005
         (268 letters)



>mm_chr5_142081313_142081985
          Length = 673

 Score =  493 bits (255), Expect = e-144
 Identities = 265/271 (97%), Gaps = 5/271 (1%)
 Strand = Plus / Minus

                                                                       
Query: 3   cggaattcctgcacaaattatgttcacctaacagatgggagtgttcgttgtgagcccact 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 cggaattcctgcacaaattatgttcacctaacagatgggagtgttcgttgtgagcccact 414

                                                                       
Query: 63  gtttataaacacacatttttaagcagggaacatttcctggctcattctaggaaggtatga 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gtttataaacacacatttttaagcagggaacatttcctggctcattctaggaaggtatga 354

                                                                       
Query: 123 taaaatcgtggtaccatatgttgctcaaacacaagcatctctcgctcctactctggacaa 182
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 353 taaaatcgtggtaccatatgttgctcaaacacaagcatctctcactcctactctggacaa 294

                                                                       
Query: 183 cactgagccagtgtgtgaatgtacaacaccaaggggggg-----ttgggtagaccaacac 237
           |||||||||||||||||||||||||||||||||||||||     ||||||||||||||||
Sbjct: 293 cactgagccagtgtgtgaatgtacaacaccaaggggggggggggttgggtagaccaacac 234

                                          
Query: 238 agcactctccaggacaacagagcaccagatc 268
           |||||||||||||||||||||||||||||||
Sbjct: 233 agcactctccaggacaacagagcaccagatc 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 673
Length adjustment: 9
Effective length of query: 259
Effective length of database: 664
Effective search space:   171976
Effective search space used:   171976
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)