Query= MSMg01no186_d02.b1 MSMg01no186_d02.b1 CHROMAT_FILE:
MSMg01no186_d02.b1 PHD_FILE: MSMg01no186_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:06 2005
(188 letters)
>mm_chr5_86338270_86338854
Length = 585
Score = 335 bits (173), Expect = 1e-96
Identities = 181/185 (97%), Gaps = 3/185 (1%)
Strand = Plus / Plus
Query: 4 ggaattcttcctgatgctctgtggaattgctgaagctgagtaaacaatgtatgttcttcc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttcctgatgctctgtggaattgctgaagctgagtaaacaatgtatgttcttcc 263
Query: 64 tcttcagggagaacaacaatattgtactgatttagatggatgcccaaccaactcaattaa 123
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcttcagggagaacaa---tattgtactgatttagatggatgcccaaccaactcaattaa 320
Query: 124 tacctgggggcaagaatatgatttgtttctaaattgcgcccatcctaaatcgaggaggtg 183
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 tacctgggggcaagaatatgatttgtttccaaattgcgcccatcctaaatcgaggaggtg 380
Query: 184 aacat 188
|||||
Sbjct: 381 aacat 385
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 585
Length adjustment: 8
Effective length of query: 180
Effective length of database: 577
Effective search space: 103860
Effective search space used: 103860
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no186_d02.g1 MSMg01no186_d02.g1 CHROMAT_FILE:
MSMg01no186_d02.g1 PHD_FILE: MSMg01no186_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:07 2005
(600 letters)
>mm_chr5_86466588_86467587
Length = 1000
Score = 1145 bits (592), Expect = 0.0
Identities = 598/600 (99%)
Strand = Plus / Minus
Query: 1 tgttagatatgaaaaaaaaacaagaaaccattcaagatcagttgtattattattctcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tgttagatatgaaaaaaaaacaagaaaccattcaagatcagttgtattattattctcaaa 741
Query: 61 gtattaagtatggtggtttattatatttaatcttgttgcactttagaaatgaaaatacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gtattaagtatggtggtttattatatttaatcttgttgcactttagaaatgaaaatacag 681
Query: 121 atatctgtccaaataatttattcaaacatatatagctatgacatgcattttctattttaa 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atatctgtccaaataatttaatcaaacatatatagctatgacatgcattttctattttaa 621
Query: 181 gtaaatacattttggttataattctacagctatgaatttcaaggttttagtatatatatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtaaatacattttggttataattctacagctatgaatttcaaggttttagtatatatatt 561
Query: 241 taatgaagggcattaaagtagatacccagctttaaattcctatgatcttattattataaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 taatgaagggcattaaagtagatacccagctttaaattcctatgatcttattattataaa 501
Query: 301 atggagggaatattaaagaaaattgaggggtaatgtgaactgctttttttaaacagatag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atggagggaatattaaagaaaattgaggggtaatgtgaactgctttttttaaacagatag 441
Query: 361 agatgttattccctgtataaaatgtttattcagtaaacaaagatgaagcttccgtctctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agatgttattccctgtataaaatgtttattcagtaaacaaagatgaagcttccgtctctc 381
Query: 421 taaagtgttgcagtaatgttttgttttagttctgtggtcaggcacacagcagcagttcca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 taaagtgttgcagtaatgttttgttttagttctgtggtcaggcacacagcagcagttcca 321
Query: 481 ttttctccgcctcctccaagtgacatgaaattattagaagatgaatttattattgatcgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttttctccgcctcctccaagtgacatgaaattattagaagatgaatttattattgatcgg 261
Query: 541 tcagatagaagtttttcaagtcgactttgggtgatgataccaagcaaagataggcatctg 600
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 260 tcagatagaagtttttcaagtcgactttgggtgatgataccaagcaaagacaggcatctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
