Query= MSMg01no186_d20.b1 MSMg01no186_d20.b1 CHROMAT_FILE:
MSMg01no186_d20.b1 PHD_FILE: MSMg01no186_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:10 2005
(324 letters)
>mm_chr5_4356704_4357432
Length = 729
Score = 540 bits (279), Expect = e-158
Identities = 310/323 (95%), Gaps = 7/323 (2%)
Strand = Plus / Minus
Query: 5 gaattcttcagaaaccatatgccatcagatgggtgtcacagtcatgtcctgaagagattt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gaattcttcagaaaccatatgccatcagatgggtgtcacagtcatgtcctgaagagattt 467
Query: 65 ctttgccttatctagatgttctaatacaaatggtcacaggagaggagcaggaccagggcc 124
|||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||
Sbjct: 466 ctttgccttatctagatgttctaacacaaattgtcacaggagaggaacaggaccagggcc 407
Query: 125 tggacacacccca-ctcgaggggg-----ggcaggaaggcctgaggacccagggctggct 178
||| ||||||||| | ||||||| ||||||| |||||||||||||||||||||||
Sbjct: 406 tggccacaccccatgt-gagggggggggaggcaggagggcctgaggacccagggctggct 348
Query: 179 acaccccagttactttcacttcaatcctagtcactttgagctagcagaattttgtcccat 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 acaccccagttactttcacttcaatcctagtcactttgagctagcagaattttgtcccat 288
Query: 239 ggtgtggtctctgcttcaggcagaaatggagcaaaacaatttttgatatcaactctaatt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ggtgtggtctctgcttcaggcagaaatggagcaaaacaatttttgatatcaactctaatt 228
Query: 299 tcctttcttccaattctaatttc 321
|||||||||||||||||||||||
Sbjct: 227 tcctttcttccaattctaatttc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 729
Length adjustment: 9
Effective length of query: 315
Effective length of database: 720
Effective search space: 226800
Effective search space used: 226800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no186_d20.g1 MSMg01no186_d20.g1 CHROMAT_FILE:
MSMg01no186_d20.g1 PHD_FILE: MSMg01no186_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:10 2005
(546 letters)
>mm_chr5_4277877_4278822
Length = 946
Score = 994 bits (514), Expect = 0.0
Identities = 538/546 (98%)
Strand = Plus / Plus
Query: 1 ttttctcttgggttgtagatagcaggctaatctacacagagggtctctactggggcaaag 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 ttttctcttgggttgtagatagcaggctaatctacacaaagggtctctactggggcaaag 260
Query: 61 ggaatcccatggaatctttgttgttgctgtttgtttgttttaatgaaaagcacagctatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaatcccatggaatctttgttgttgctgtttgtttgttttaatgaaaagcacagctatg 320
Query: 121 acagatttcaatctaaataagcttttcccacgagacatttgctggcaactatagattgtg 180
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 acagatttgaatctaaataagcttttcccatgagacatttgctggcaactatagattgtg 380
Query: 181 aatatgttttgtaaaagatgcagtctttaaaacagtccttatgaatatgctacagaatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 aatatgttttgtaaaagatgcagtctttaaaacagtccttatgaatatgctacagaaaat 440
Query: 241 actgaaaatatgtacaagacaaaataagtttgaaattggtagattcaaacacaaaattcc 300
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 441 actgaaaatatgtacaagacaaaataagtttgaaattggtagattcaaatagaaaattcc 500
Query: 301 tacctgtacaaaatagaatggccatctccgagcttaaaactagaaatacagtatgtgaag 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 tacctgtacaaaatagaatggccatctcggagcttaaaactagaaatacagtatgtgaag 560
Query: 361 ctcgtaaatcattgaataggtttaaccttacacgtggcacaacacaagacagaacaaaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcgtaaatcattgaataggtttaaccttacacgtggcacaacacaagacagaacaaaat 620
Query: 421 gactcaaacccactaaaaatgtttaaaataagtcacccaaaatgagtcctatagaagaaa 480
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 gactcaaacccactaaaaatgtttaaaataagtcactcaaaatgagtcctatagaagaaa 680
Query: 481 ggcacaggaagagtgtaacagaggttaagagatgtgtaagtaacatgggtgtagctggag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggcacaggaagagtgtaacagaggttaagagatgtgtaagtaacatgggtgtagctggag 740
Query: 541 ttccac 546
||||||
Sbjct: 741 ttccac 746
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
