Query= MSMg01no186_e08.b1 MSMg01no186_e08.b1 CHROMAT_FILE:
MSMg01no186_e08.b1 PHD_FILE: MSMg01no186_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:12 2005
(624 letters)
>mm_chr5_88057163_88058186
Length = 1024
Score = 725 bits (375), Expect = 0.0
Identities = 389/397 (97%), Gaps = 6/397 (1%)
Strand = Plus / Minus
Query: 228 atcaggctgttatcaagcatgtaggacattttcttaattaatgattgatgtttgatatcc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1020 atcaggctgttatcaagcatgtaggacattttcttaattaatgattgatgtttgatatcc 961
Query: 288 tagcacattaggggtagcaccatcccttgcttggtagtcctaagttctataagaaagtag 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960 tagcacattaggggtagcaccatcccttgcttggtagtcctaagttctataagaaagtag 901
Query: 348 cctgagcaaaccatttggagtaagccaatagtagcactcctttatgacctctgagtcaga 407
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 cctgagcaaaccatttggagtaagccaatagtagcactcctttatgacctctgagtc--- 844
Query: 408 ttatgcctccatgttattgtcccctcccttcacatcctttaagttcttaggaaagaagca 467
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 843 ---tgcctccatgttattgtcccctcccttcacatcctttaaattcttaggaaagaagca 787
Query: 468 gaataacagcaagggcagaacacatctcagaatgaatgaatatcaccctgggactaaatg 527
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 786 gaataacagcaagggcagaacacatctcagaatgaatgaatatcaccctgggactaaacg 727
Query: 528 catctgcatatgtttatccatgtctctcttaacccattgcacatcacagaagcaagcctt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 catctgcatatgtttatccatgtctctcttaacccattgcacatcacagaagcaagcctt 667
Query: 588 acaattgactctccttctctctctctctttggctgga 624
|||||||||||||||||||||||||||||||||||||
Sbjct: 666 acaattgactctccttctctctctctctttggctgga 630
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no186_e08.g1 MSMg01no186_e08.g1 CHROMAT_FILE:
MSMg01no186_e08.g1 PHD_FILE: MSMg01no186_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:12 2005
(287 letters)
>mm_chr5_87978562_87979248
Length = 687
Score = 555 bits (287), Expect = e-162
Identities = 287/287 (100%)
Strand = Plus / Plus
Query: 1 cttactctttctaagtcctcagtaccttattctggaagagactgtgtgtgtgaacagatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttactctttctaagtcctcagtaccttattctggaagagactgtgtgtgtgaacagatt 260
Query: 61 gactttttcataatctgggaattctgtgtcttgagcagagagaagccaccaggatcattg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactttttcataatctgggaattctgtgtcttgagcagagagaagccaccaggatcattg 320
Query: 121 accaggtattttatatctgtgttgaaccaatgctcactaatagtcttgactttgaaagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accaggtattttatatctgtgttgaaccaatgctcactaatagtcttgactttgaaagat 380
Query: 181 ttataaagcaaataagagtccctgaattgtgtcattcattctaatgtacttcagtgtata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttataaagcaaataagagtccctgaattgtgtcattcattctaatgtacttcagtgtata 440
Query: 241 agccattgtttactgacaccatttctttaatgccacttcaaagaata 287
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agccattgtttactgacaccatttctttaatgccacttcaaagaata 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
