BAC Information

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BAC

Clone NameMSMg01-186G13
Chromosome5 (Build37)
Map Location 98,009,500 - 98,009,793
singlet/doubletsinglet
Overlap genenone
Upstream geneFras1, Anxa3, EG666266, LOC670358, Bmp2k, Paqr3, LOC100040598, EG433923, EG666293, C80008, Gk2
Downstream geneAntxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5, 1700007G11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186G13.T7 (MSMg01no186_g13.b1)MSMg01-186G13.TJ (MSMg01no186_g13.g1)
ACCAG378102AG378103
length857768
length of high quality
(start - end)
114 (118 - 231)293 (77 - 369)
definitionCHROMAT_FILE: MSMg01no186_g13.b1 PHD_FILE: MSMg01no186_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:23 2005CHROMAT_FILE: MSMg01no186_g13.g1 PHD_FILE: MSMg01no186_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTGT
AACTTGGCTAAAACATACAGAAGAAGGGGTCTGTAGGGACGGGGAAGAGA
GATGCCAAGTGTGACCGCAGGACATTCTGAACCATCCCAATGCCCTGATG
TTTTAATACAGTTCCTTATGCTCTGGTGACACCGGACCACAGGATTCTTT
TCTTTCTTTTTTTTTTAATTTTTTTATTGGGTATTTTTCTAATTTACTTT
TCTCATGCTTCTTCCAAAGTTTCTCATACTCTTCTTATTATAATTAATAA
CAATATTTACTCTTTTTTTTTTTTTTTGTTCTTTCTTTCATTCTTTGAGA
GGATTATTTGTATTGTTTCACCCCCCCCCCCCCCTTTTATTTTATTTTAT
GTATAACATTCTGTTTTTGCCCCCCCCCCCATATAAAAAAAAAAAAATTA
TTTTCTTTCTTTCGTTATTTCACTATTCTTTATCTCATTTATATTCTTAT
TTTATTAACTTATTATTTTTTTGTTATTTACTTTCTCACTACATATTTAT
TCTACCTCTATCTATTTCTTCCTTTACTCTTATTTTTCTTTTCTTCATTT
CTCTCCGCCTTCCTTTATTAAAATCCACTAATACTTTAGTAAACATTTAT
ATTATATATTTTATTATCTATTATTCTTTTCTCATGCATTTCCCTTCATC
AATTCCTCCTCTTTCGTATATTTCATCTATGTACTCTCTCTACCACTTAT
TCTTCTCATCAATTATTCTATTTAGTCCTGTTTGTCTTTATATTATACTC
TCTTCTCTCATCACATCTTCCTACCTTGCTTTTCTCTTCTCTTCTGTTGT
TCTTTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCTTCCTTAATACCCATAGTCCA
AACTGTGGGTCTTTTCATGGGTACCCAAACTCTCTCAGGCTTCATTCATG
AATATAAATTTATCATTGACTTTTGCAGAATGAATGATCCATTTCTTCTG
TGTTGTGTTCCAACCCTGATACCCTGGTTTCCATATGATTCATTTGTCAA
TGAGGATTTTATTTGGCTAATTTCTTTTTTTTTTTTAATTTTCAACCTCA
TTTCAATTTGACTTTCTTTTCTAGTAAGTCTATCTATTTTGCTTGAATTC
TGTTTTCCTTTTGTATTATTTTCCTCACCCACTTGTCCTTGTTTGTGGCT
CCTTTGAGTTGTGCACCCCCACTTATAATAAATCTTTTGAATTCTTTGAC
ATCTAGGCTTTGAGCCTAGGTAGGATGTAACAATTAAAGCAACTCATATC
CTCACTTTGTTTAAGACTATAAGGTACGTAAATCCCGTTCTTAAAGCAAA
AACGTTTGTCAATACTGTTTTTATTACCATAAATATGTACTTTCATGAAA
CTTACTACGTTTAAACATCTCCAGTCCTTGTTTCCATGATCGTTTGAAAC
AACCGCTTTTTCAACCACCATTTTTCATTATTTCTCATTCCAATTTCTTT
ACTTTTCTTCACATTTTTATTACTTATCTACAGCCATAATTATATTAAAA
CCCATCCACCCTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_g13.g1 MSMg01no186_g13.g1 CHROMAT_FILE:
MSMg01no186_g13.g1 PHD_FILE: MSMg01no186_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:23 2005
         (293 letters)



>mm_chr5_98009300_98009994
          Length = 695

 Score =  549 bits (284), Expect = e-161
 Identities = 291/294 (98%), Gaps = 2/294 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccttccttaatacccatagtccaaactgtgggtcttttcatgggtacccaaactctctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tccttccttaatacccatagtccaaactgtgggtcttttcatgggtacccaaactctctc 435

                                                                       
Query: 61  aggcttcattcatgaatataaatttatcattgacttttgcagaatgaatgatccatttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aggcttcattcatgaatataaatttatcattgacttttgcagaatgaatgatccatttct 375

                                                                       
Query: 121 tctgtgttgtgttccaaccctgataccctggtttccatatgattcatttgtcaatgagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tctgtgttgtgttccaaccctgataccctggtttccatatgattcatttgtcaatgagga 315

                                                                       
Query: 181 ttttatttggctaatttc--ttttttttttttaattttcaacctcatttcaatttgactt 238
           ||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||
Sbjct: 314 ttttatttggctaatttcttttttttttttttaattttcaacctaatttcaatttgactt 255

                                                                 
Query: 239 tcttttctagtaagtctatctattttgcttgaattctgttttccttttgtatta 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tcttttctagtaagtctatctattttgcttgaattctgttttccttttgtatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 695
Length adjustment: 9
Effective length of query: 284
Effective length of database: 686
Effective search space:   194824
Effective search space used:   194824
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)