Query= MSMg01no186_j06.b1 MSMg01no186_j06.b1 CHROMAT_FILE:
MSMg01no186_j06.b1 PHD_FILE: MSMg01no186_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:36 2005
(234 letters)
>mm_chr5_20322000_20322633
Length = 634
Score = 393 bits (203), Expect = e-114
Identities = 206/207 (99%)
Strand = Plus / Plus
Query: 5 gaattctaggaaagtagttctcagaaacacaccaaaacactacttttaagggctaaatta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaggaaagtagttctcagaaacacaccaaaacactacttttaagggctaaatta 264
Query: 65 cttctatagtcactacgtttagatcagcagctagggtatcaaaaggctcaagagacagca 124
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 265 cttctatagtcactacgtttagatcagcagctaggatatcaaaaggctcaagagacagca 324
Query: 125 gcagcaatcttaccaaaggtagctgtccacagtgtatttattgtactggatgcttagatg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcagcaatcttaccaaaggtagctgtccacagtgtatttattgtactggatgcttagatg 384
Query: 185 atataaaagactaaaagtctagaaatg 211
|||||||||||||||||||||||||||
Sbjct: 385 atataaaagactaaaagtctagaaatg 411
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space: 140625
Effective search space used: 140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no186_j06.g1 MSMg01no186_j06.g1 CHROMAT_FILE:
MSMg01no186_j06.g1 PHD_FILE: MSMg01no186_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:36 2005
(542 letters)
>mm_chr5_20434495_20435436
Length = 942
Score = 801 bits (414), Expect = 0.0
Identities = 463/488 (94%), Gaps = 15/488 (3%)
Strand = Plus / Minus
Query: 55 tgcatgctgtggcatgtaccccactcccgatctctcgctctcttaacccccgccccctac 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 tgcatgctgtggcatgtaccccactcccgatctctcgctctcttaacccccgccccctac 883
Query: 115 acacacagatagacagagacagacagagaagagagacaagagaaaggaaaatagttcagt 174
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 882 acacacagatagacagagacagacaaagaagagagacaagagaaaggaaaatagttcagt 823
Query: 175 aatttaaaaacaacttgaagtgatgttatatatgtattgggctaaataaaatgtgttact 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 aatttaaaaacaacttgaagtgatgttatatatgtattgggctaaataaaatgtgttact 763
Query: 235 aaaagtaatttcaccgctacttgttattctttcaatgtgactgctgaaaaacgcaaattt 294
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 762 aaaagtaatttcaccgctacttgttattcttttaatgtgactgctgaaaaacgcaaattt 703
Query: 295 gcagatgacattatgtttctgttggtaagttcaagttgagaccatcatctagttatcata 354
|||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct: 702 gcagatgacattatgtttctgttggtaagttcgagctgagatcatcatctagttatcata 643
Query: 355 tgattatagcctggattagggtgatgcttactaaagtaagaagtttttaagggattctac 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tgattatagcctggattagggtgatgcttactaaagtaagaagtttttaagggattctac 583
Query: 415 agtatccatatacattgcaaatattccattttactaggttgtgtgtttctgttatagctt 474
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 582 agtatccatatacattgcaaagattccattttactaggttgtgtgcttctgttatagctt 523
Query: 475 tgtaacaacagcaacaacaacaacaacaactacaacaagcttttgaagggaagggcagca 534
|||| ||| |||||||||||| || |||||||||||||||||||| |
Sbjct: 522 tgtagcaatagcaacaacaac--ca-------------gcttttgaagggaagggcagta 478
Query: 535 ttactttg 542
||||||||
Sbjct: 477 ttactttg 470
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
