BAC Information

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BAC

Clone NameMSMg01-186P22
Chromosome5 (Build37)
Map Location 8,392,916 - 8,393,305
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC242823, LOC667767, EG546855, Steap4, Sri, LOC433840, Adam22
Downstream geneDbf4, Slc25a40, Gm440, Abcb1a, EG330031, Abcb1b, Abcb4, Crot, 4930420K17Rik, Dmtf1, LOC654361, 9330182L06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186P22.T7 (MSMg01no186_p22.b1)MSMg01-186P22.TJ (MSMg01no186_p22.g1)
ACCAG378502AG378503
length752794
length of high quality
(start - end)		320 (46 - 365)388 (77 - 464)
definitionCHROMAT_FILE: MSMg01no186_p22.b1 PHD_FILE: MSMg01no186_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:10 2005CHROMAT_FILE: MSMg01no186_p22.g1 PHD_FILE: MSMg01no186_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAG
TAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAA
TCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGT
ACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGA
TACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATG
ATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCT
GATAAACAGCTTCGTTGTTGTAGCTGCACACCCCACAAACTCAAACAAGT
CAATGGCCTTTCTCTATACCCCGAATAAACAGGATGAGAAAGAAATTAGG
GAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGGCAT
GACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAATCTC
TGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGC
TCATGGATTGGCAGGATCAACATTGTAAAAATGGGTATCTTGCCCAAAGC
AATCTACAGATTCAATGCGATCCCCATCAAATTCCAACTCAATTCTTCAA
CGAATTATAAGGAGCAATTTGCAAATCTTCTGGGAAAAAAAAAAAACCAG
GA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAAAACGAGGCAGATAAAGTAAC
AACCCACTGTAAGCTGGGCAGGTTTGGGCAAAAACAAGATCAGAGGGCTC
AGTTAGTTACAGAGCAAATGAGACATCTTCGAAATTAACAGCCCCCAACC
CACCCCCACGTGGTACAAATGTGGTCCTAAGCCAATCCTAGGGGACATCC
CTAAGACTAGCTGGAAAGGAAGGAAATCTAAAACAGCCCATAAAAAGGTT
TGTGGGTTAAAAAGAAAAATAAATGTAACTGTCAAATTGCTCTACTCAGG
AGTTGCATAAAAGCCAGTCTCCATGGACAGCTTCCCCATGTCCTTCCTTG
GCTATCTGTCCCTTTATACGCCACGAAAAGTGGACGAAGTTTAGACTATA
TTGGGACTTATGGGGAATGAGTAATTACACTACTGCCTTTTATCGAGCCT
AGAGAAAAGGAAATGAGTGTAACAGGTATATACCCGTGCCCGTATTCATC
TCCATTTCGCCGGATATCGCCCTATTTTAGCAACGTTATATTCCCTTTTT
GGATTGGTGTCTTATAATTTCCCATTCCCCCGTTGTTTTCACCAACATTT
TTTGATCTCCTTTTTCCCTCTATTTCTTCCCCACTTTTACCTTCTATTTT
TTTGATTTTATGAACCCCCCATTTTCTTTTCTCCCCGCTATCTCCCGTTT
ATCCACTATCCATTTTTTTTCCTCTCTTTCGTTTTCTATCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_p22.g1 MSMg01no186_p22.g1 CHROMAT_FILE:
MSMg01no186_p22.g1 PHD_FILE: MSMg01no186_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:10 2005
         (388 letters)



>mm_chr5_8392721_8393508
          Length = 788

 Score =  601 bits (311), Expect = e-176
 Identities = 368/395 (93%), Gaps = 15/395 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaaacgaggcagataaagtaacaacccactgtaagctgggcaggtttgggcaaaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ataaaacgaggcagataaagtaacaacccactgtaagctgggcaggtttgggcaaaaaca 255

                                                                       
Query: 61  agatcagagggctcagttagttacagagcaaatgagacatcttcgaaattaacagccccc 120
           ||||||||||||||||||||    ||||||||||||||| |||||  |||||||||||||
Sbjct: 256 agatcagagggctcagttag----agagcaaatgagacagcttcg-cattaacagccccc 310

                                                                       
Query: 121 aacccacccccacgtggtacaaatgtggtcctaagccaatcctaggggacatccctaaga 180
           | |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 311 accccacccccacgtggtacaaatgtggtcctaacccaatcctaggggccatccctaaga 370

                                                                       
Query: 181 ctagctggaaaggaaggaaatctaaaacagcccataaaaaggtttgtgggttaaaaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ctagctggaaaggaaggaaatctaaaacagcccataaaaaggtttgtgggttaaaaagaa 430

                                                                       
Query: 241 aaataaatg----------taactgtcaaattgctctactcaggagttgcataaaagcca 290
           |||||||||          ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 431 aaataaatgagacaggatctaactgtcaaattgctctactcaggagttgcatgaaagcca 490

                                                                       
Query: 291 gtctccatggacagcttccccatgtccttccttggctatctgtccctttatacgccacga 350
           |||||| |||||||||||||||||||||||||||||||||||| |||||||| |  | ||
Sbjct: 491 gtctccgtggacagcttccccatgtccttccttggctatctgttcctttatatggaagga 550

                                              
Query: 351 aaagtggacgaagtttagactatattgggacttat 385
           |||||||||||||||||||||||||||||||||||
Sbjct: 551 aaagtggacgaagtttagactatattgggacttat 585


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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