Query= MSMg01no187_d14.b1 MSMg01no187_d14.b1 CHROMAT_FILE:
MSMg01no187_d14.b1 PHD_FILE: MSMg01no187_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:28 2005
(320 letters)
>mm_chr5_76001685_76002405
Length = 721
Score = 594 bits (307), Expect = e-174
Identities = 313/315 (99%), Gaps = 1/315 (0%)
Strand = Plus / Minus
Query: 4 ggaattcacctattttcaaacaatactccttacaggacagtcctcactgaaataatatct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ggaattcacctattttcaaacaatactccttacaggacagtcctcactgaaataatatct 459
Query: 64 acatatctcccaaatgttacgggg-aaaaaaatgcctggatcatcaagattagactctgg 122
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 458 acatatctcccaaatgttacggggaaaaaaaatgcctggatcatcaagattagactctgg 399
Query: 123 gttgtttaccacatatgttggcttccaatctgatcaatctaacacctagagagtccacat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gttgtttaccacatatgttggcttccaatctgatcaatctaacacctagagagtccacat 339
Query: 183 tactgtgacatatgctctttacatacatttcagagttaaagaaagaacgcagtgccagga 242
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tagtgtgacatatgctctttacatacatttcagagttaaagaaagaacgcagtgccagga 279
Query: 243 gccagggaaaaaggcactgtcaggcaaacctggccatctgagttataagccgggggatag 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gccagggaaaaaggcactgtcaggcaaacctggccatctgagttataagccgggggatag 219
Query: 303 aaccaattcttaaaa 317
|||||||||||||||
Sbjct: 218 aaccaattcttaaaa 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 721
Length adjustment: 9
Effective length of query: 311
Effective length of database: 712
Effective search space: 221432
Effective search space used: 221432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no187_d14.g1 MSMg01no187_d14.g1 CHROMAT_FILE:
MSMg01no187_d14.g1 PHD_FILE: MSMg01no187_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:28 2005
(560 letters)
>mm_chr5_75871281_75872240
Length = 960
Score = 944 bits (488), Expect = 0.0
Identities = 543/568 (95%), Gaps = 12/568 (2%)
Strand = Plus / Plus
Query: 4 tggtatttacaaagtaggagtaaaagctctggtgtggccttgtgcgcttaaaggaagtct 63
||||||||||||||||||||||||||| |||| ||||||||||| | || ||||||||||
Sbjct: 194 tggtatttacaaagtaggagtaaaagccctggcgtggccttgtgtgtttgaaggaagtct 253
Query: 64 tctgcctacagagaggggcagggctgaccccaaaggtcatgaagaaattgggatcctcat 123
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 254 tctgcctacagagaggggcagggctgaccccaaaggtcatgaagaaattgtgatcctcat 313
Query: 124 tgttcacggaaggctaacctcacagctggctatcctggccccagtcttgggaccactggg 183
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 314 tgttcacggaaggctaacctcacagctggctgtcctggccccagtcttgggaccact-gg 372
Query: 184 gtggctctgctctttgcaca-----------cccctgtctaatcagtggcttctgctttc 232
|||||||||||||||||||| ||||||||||| ||||||| |||||||||
Sbjct: 373 gtggctctgctctttgcacacacgtacagggcccctgtctaagcagtggcctctgctttc 432
Query: 233 agctcagtgacctggaggtttccaatcccttttgagcctttgtccccaagtcctgttccg 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 agctcagtgacctggaggtttccaatcccttttgagcctttgtccccaagtcctgttccg 492
Query: 293 gatcctttagagattagtctctgttagagaagtcaagctagcccagcacagagattctga 352
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 493 gatcctttagagattagtctctgttagagaagtcaagctagcccaggacagagattctga 552
Query: 353 gagacagggaaagaacgaaagatcagcagcctccatcttatggggcttttcgttcacaga 412
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gagacaggaaaagaaccaaagatcagcagcctccatcttatggggcttttcgttcacaga 612
Query: 413 atagtagcaaaccactcactcgaacagttcagaaaaacacatcaaagatgttctttcagg 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 atagtagcaaaccactcactcgaacagttcagaaaaacacatcaaagatgttctttcagg 672
Query: 473 cctgtgtataggagctcagcaatcaggcaatctaggaattgatgagaagggagctggcaa 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cctgtgtataggagctcagcaatcaggcaatctaggaattgatgagaagggagctggcaa 732
Query: 533 gggggctcaggtgtattctttttgttaa 560
||||||||||||||||| ||||||||||
Sbjct: 733 gggggctcaggtgtattttttttgttaa 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
