Query= MSMg01no187_g03.b1 MSMg01no187_g03.b1 CHROMAT_FILE:
MSMg01no187_g03.b1 PHD_FILE: MSMg01no187_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:41 2005
(315 letters)
>mm_chr5_54197750_54198464
Length = 715
Score = 584 bits (302), Expect = e-171
Identities = 308/310 (99%)
Strand = Plus / Minus
Query: 4 ggaattctcagttccctgaggatgatgtagcgagtatgcaaagagctttaataaatgaca 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ggaattctcagttccctgaggatgatgtagcgagtatgcaaagagctttaataaatgaca 454
Query: 64 ggcccatcattcccccacctgtgtgtgcacctttttctgtattcaggtccctgttccaca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ggcccatcattcccccacctgtgtgtgcacctttttctgtattcaggtccctgttccaca 394
Query: 124 gttaactgaagaggaaaggtctcaattcgagactccaatagaggacttgcattcaccatc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 393 gttaactgaagaggaaaggtctcaattcgagactccaatagaggacttgcattcaacatc 334
Query: 184 gttattgtacccggaataagtagagactgggaaaatccgctaatttcacatttcaaggtg 243
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gttactgtacccggaataagtagagactgggaaaatccgctaatttcacatttcaaggtg 274
Query: 244 acaattgactcagcctactatgtgaataacagagtccaaagtcacctgagtggttacagc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 acaattgactcagcctactatgtgaataacagagtccaaagtcacctgagtggttacagc 214
Query: 304 tgcctaaata 313
||||||||||
Sbjct: 213 tgcctaaata 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space: 216036
Effective search space used: 216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no187_g03.g1 MSMg01no187_g03.g1 CHROMAT_FILE:
MSMg01no187_g03.g1 PHD_FILE: MSMg01no187_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:41 2005
(438 letters)
>mm_chr5_54172279_54173115
Length = 837
Score = 785 bits (406), Expect = 0.0
Identities = 430/438 (98%), Gaps = 2/438 (0%)
Strand = Plus / Plus
Query: 2 aaaaatgcactcttcacagactgtccaattatttttaaattattcaatgtatcattctta 61
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aaaaatgtactcttcacagactgtccaattatttttaaattattcaatgtatcattctta 261
Query: 62 tatgcaatttaagattgccccaaaatggatattttgaaaggaagagattgaaaaaaaacc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 262 tatgcaatttaagattgccccaaaatggatattttgaaaggaagagattgaaaaaaa-cc 320
Query: 122 cttctaaaatagttttatttattttgaatctgaatttatcaattcacatgtcagcaatga 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttctaaaatagttttatttattttgaatctgaatttatcaattcacatgtcagcaatga 380
Query: 182 gaatgtaggctctaacttaagctcacttggcatttgattttctgccactgttgtagaaat 241
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcatgtaggctctaacttaagctcacttggcatttgattttctgccactgttgtagaaat 440
Query: 242 atgtcacagggatgtgcgggtccagctggagggaagatatcctttattttgatcataaaa 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtcacagggatgtgcgggtccagctggagggaagatatcctttattttgatcataaaa 500
Query: 302 catgatgctttctttttattcccacccatgggttacacaaga-ttgttgctgaatccatc 360
|||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 501 catgatgctttcttttcattcccacccatcggttacacaagaattgttgctgaatccatc 560
Query: 361 tgggaagtttctaccttcccaatgtcaatcacttgctcttaaaaacaaatggagaagtgc 420
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 561 tgggaagtttctaccttcccaatgtcaatcacttgctcttgaaaacaaatggggaagtgc 620
Query: 421 tccaccctgtacttctaa 438
||||||||||||||||||
Sbjct: 621 tccaccctgtacttctaa 638
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 837
Length adjustment: 9
Effective length of query: 429
Effective length of database: 828
Effective search space: 355212
Effective search space used: 355212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
