Query= MSMg01no187_k05.b1 MSMg01no187_k05.b1 CHROMAT_FILE:
MSMg01no187_k05.b1 PHD_FILE: MSMg01no187_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:00 2005
(571 letters)
>mm_chr5_61022364_61023334
Length = 971
Score = 1060 bits (548), Expect = 0.0
Identities = 563/568 (99%), Gaps = 2/568 (0%)
Strand = Plus / Plus
Query: 5 gaattcagtgtctgttcagattcctaagtgcattatctctctaagggtgtatcaaatcat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtgtctgttcagattcctaagtgcattatctctctaagggtgtatcaaatcat 264
Query: 65 cctactttttatatgttctattattttatgccaatacctagactgttaacagcacattta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctactttttatatgttctattattttatgccaatacctagactgttaacagcacattta 324
Query: 125 tggagactaaaaggaaggtattgacagccccattcagtaagcataagaaatatgacttca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggagactaaaaggaaggtattgacagccccattcagtaagcataagaaatatgacttca 384
Query: 185 ataagggagagtaccttaattttattcaggaaagcttttaaagtaaatcaaactgttatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataagggagagtaccttaattttattcaggaaagcttttaaagtaaatcaaactgttatt 444
Query: 245 taaataaagtcaataaaatctattgaatttattatagaaatgtttatttctcacataaag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taaataaagtcaataaaatctattgaatttattatagaaatgtttatttctcacataaag 504
Query: 305 gcaacctctaaagagttgacattatttgaaacaaaatgcccgagtggtattcatgactga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcaacctctaaagagttgacattatttgaaacaaaatgcccgagtggtattcatgactga 564
Query: 365 cgcactt-aatcaagaattcatttgcccaggaagcttctcattttccccactttcagatc 423
| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tg-attttaatcaagaattcatttgcccaggaagcttctcattttccccactttcagatc 623
Query: 424 aatagggcaacgtgtcacttccaaactgtacttactgggagttaggactaatttcatgtt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aatagggcaacgtgtcacttccaaactgtacttactgggagttaggactaatttcatgtt 683
Query: 484 gcagcaaaatcttcattgaatttcctgcattttcccctgcacctatttattttcttctat 543
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gcagtaaaatcttcattgaatttcctgcattttcccctgcacctatttattttcttctat 743
Query: 544 attatatgtgcaggaacatatgctcagc 571
||||||||||||||||||||||||||||
Sbjct: 744 attatatgtgcaggaacatatgctcagc 771
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no187_k05.g1 MSMg01no187_k05.g1 CHROMAT_FILE:
MSMg01no187_k05.g1 PHD_FILE: MSMg01no187_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:01 2005
(600 letters)
>mm_chr5_61087157_61088156
Length = 1000
Score = 1131 bits (585), Expect = 0.0
Identities = 594/597 (99%)
Strand = Plus / Minus
Query: 1 ctgaattgaatgggctggactctatttgctcagtgccaattgagtttgacaagcaggaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ctgaattgaatgggctggactctatttgctcagtgccaattgagtttgacaagcaggaaa 738
Query: 61 gtaatgtttgcagagcagagaaagaatatttgaagtccagaagagttgattacatagatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gtaatgtttgcagagcagagaaagaatatttgaagtccagaagagttgattacatagatg 678
Query: 121 acctcaggaactggggtgaatgagctggtacatatgagatgcacctttcctttgcacttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 acctcaggaactggggtgaatgagctggtacatatgagatgcacctttcctttgcacttt 618
Query: 181 ggagtctggaatattgctttgattgttcttacaaagcgcaatcatacccaaaaggcttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ggagtctggaatattgctttgattgttcttacaaagcgcaatcatacccaaaaggcttta 558
Query: 241 aagattcctattaggattcataaggtcttggaggctggtaagcaattattggcatcttat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aagattcctattaggattcataaggtcttggaggctggtaagcaattattggcatcttat 498
Query: 301 gatcatttccctgacaatcccactaccctgactcacctgccgagccattgagttcccatc 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 497 gatcatttccctgacaatcccactaccctgactcacctgctgagccattgagttcccatc 438
Query: 361 aaagcctcaacattttcctccccataatctgttactaacctgtatttgggtatttttcaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aaagcctcaacattttcctccccataatctgttactaacctgtatttgggtatttttcaa 378
Query: 421 actgtctcaaataatattattcatatttcaaaggaatatatattgtaattacctagtttt 480
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 377 actgtctcaaataatattattcatatttcaaaggcatatacattgtaattacctagtttt 318
Query: 481 tctctatttaaattaagctaggtttagtaacattatttaaggatggaacattttataaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tctctatttaaattaagctaggtttagtaacattatttaaggatggaacattttataaca 258
Query: 541 ttttgactggacattacctaaatacccttggcatttggaacacaaatagagttttcc 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttttgactggacattacctaaatacccttggcatttggaacacaaatagagttttcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
