BAC Information

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BAC

Clone NameMSMg01-187M03
Chromosome5 (Build37)
Map Location 149,946,664 - 150,081,564
singlet/doubletdoublet
Overlap geneEG667410, LOC100040006, Uspl1, 2310047D07Rik, Alox5ap
Upstream geneC130038G02Rik, LOC100041819, Slc7a1, LOC100041842, Ubl3, 2210417A02Rik, LOC100041869, Katnal1, 8430423G03Rik, 1810059H22Rik, LOC667386, LOC100039964, Hmgb1
Downstream gene6330406I15Rik, 4930588N13Rik, LOC100040037, LOC100040062, 4930434E21Rik, Hsp110, EG433968, B3galtl, LOC100040089, Rxfp2, LOC667470, Fry
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187M03.T7 (MSMg01no187_m03.b1)MSMg01-187M03.TJ (MSMg01no187_m03.g1)
ACCAG378994AG378995
length729771
length of high quality
(start - end)
685 (45 - 729)132 (79 - 210)
definitionCHROMAT_FILE: MSMg01no187_m03.b1 PHD_FILE: MSMg01no187_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:10 2005CHROMAT_FILE: MSMg01no187_m03.g1 PHD_FILE: MSMg01no187_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,080,884 - 150,081,564)(149,946,664 - 149,946,794)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGCCTAGCTGAGCCCCTCCTCTTGCTATCATTTAAGTCCGTCCAT
TTGTCCTCTTGCTATCATTTAAGGACATACCTGTCTGCTCTAAATGTCTC
CACTAACAGAAAACATAATAGAAACTCTAGGCATCTCCTTTCTCAGGACT
CAAAATGGCCTCTCTTGCCTCCAAACACAGAGGGCAGGCTGGTGTCATGG
AACTCAAAGGCTAGTTATCTGTGAGCGCGGGACTGAGCTACACCTCTCTG
TCAGCCTCATCTGCCCCTTCGTGGTCAAAAAAGCAAAGCCTTTCTTTTCG
CCCCAGGTATAAACCCTCTCCCTGCTGTGTAGGTCCAACCCTCCCACCCA
CCATCCTCAAGTCCTCAAGTCTGTATGTTCTCTGCTGTCCCGACCCCTTT
AACTTTCAAGGTCTCCCGTTCTCGGGGTCACCTAAAGATACCTGCAAATC
CTTCCAACCCACAATTCCAAACGTGAGCATGTCTTCCTCAGTCCATCTAT
GGCTGCAGCCTCTCCCTCTTTTACCTGCTTTATGCCTCGACAGTCTCCCT
AACTCTTTATAGACCTCGAGGCAACTCCGGAAGCCACGCGGGCAAGGACC
ATGTGTCCTCCTCTCTATGGCTAGCTGTTAATATTAAACTGGAACCGGCA
AGCAAATGAGAGACAAATACCACAGGTGG
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCATACATCCCTCTGCAGCCCCA
AGGTCTACATTAGCAAGCATTTCTTCAATAAGGAGAGGAAAGAGGGACCT
CCAACCAGGCTTTCCAGGAAAACACTAGATTGTGGTAGAGGGAGGTGGGG
GAAGGAAGANNNNNNNNNNNNNNNNNNNNCCNNNNTNCNTNCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCC
CCCCCCCCCCCCCCCCCTTTTTTTCTCCCCCCCCCCCCCCCCCCCCTCTC
TCCTTTTTTTTTTTTCCCCCCCCCCCCCCTTCCTTTCTTTTTTTTTCTTT
CTCTTCTTGGTGCCCCCCAAAAAAAAAAAAAATTATCTTCCCCCGCTTTT
CTCCCTATTTATTTTCCCCCGTTCTCCATTTCTTTTCCGACCTTTTTGTT
CTCGCTCCCCCTCTATTTCCTTTCGCCCATTTTCACCGCCCTCATTTTCT
ATCTTGGGTTGCCCTGTGGCGTGTTACACCCCCCCTTTTTATGTTTCCCC
TCGTTTTCCCGCCCCCTTGTTCTCTCTCCCCTCTCTTTTCCCTTTCGCCC
CCTATTTCTCTCGTTCTCCCTTTCGTACTCCTCGCCTTCCTGTTTGGGCC
CCTCTCTCTTCTCCCACCCGTTTTGTCTCACTCCCTCCTCCCCCGGTTAT
CGTCATTTCTTCCCCTTTGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_m03.b1 MSMg01no187_m03.b1 CHROMAT_FILE:
MSMg01no187_m03.b1 PHD_FILE: MSMg01no187_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:10 2005
         (685 letters)



>mm_chr5_150080680_150081764
          Length = 1085

 Score = 1255 bits (649), Expect = 0.0
 Identities = 673/681 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagcctagctgagcccctcctcttgctatcatttaagtccgtccatttgtcctc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 gaattccagcctagctgagcccctcctcttgctatcatttaagtccgtccatttgtcctc 826

                                                                       
Query: 65  ttgctatcatttaaggacatacctgtctgctctaaatgtctccactaacagaaaacataa 124
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 825 ttgctatcatttaaggacatacctgtctgctctaaatgtctccactaagagaaaacataa 766

                                                                       
Query: 125 tagaaactctaggcatctcctttctcaggactcaaaatggcctctcttgcctccaaacac 184
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 765 tagaaactctaggcatctcctttctcaggactcaaaatgtcctctcttgcctccaaacac 706

                                                                       
Query: 185 agagggcaggctggtgtcatggaactcaaaggctagttatctgtgagcgcgggactgagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 agagggcaggctggtgtcatggaactcaaaggctagttatctgtgagcgcgggactgagc 646

                                                                       
Query: 245 tacacctctctgtcagcctcatctgccccttcgtggtcaaaaaagcaaagcctttctttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 tacacctctctgtcagcctcatctgccccttcgtggtcaaaaaagcaaagcctttctttt 586

                                                                       
Query: 305 cgccccaggtataaaccctctccctgctgtgtaggtccaaccctcccacccaccatcctc 364
           ||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 585 cgccccagggacaaaccctctccctgctgtgcaggtccaaccctcccacccaccatcctc 526

                                                                       
Query: 365 aagtcctcaagtctgtatgttctctgctgtcccgacccctttaactttcaaggtctcccg 424
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 aagtcctcaagtctgtttgttctctgctgtcccgacccctttaactttcaaggtctcccg 466

                                                                       
Query: 425 ttctcggggtcacctaaagatacctgcaaatccttccaacccacaattccaaacgtgagc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ttctcggggtcacctaaagatacctgcaaatccttccaacccacaattccaaacgtgagc 406

                                                                       
Query: 485 atgtcttcctcagtccatctatggctgcagcctctccctcttttacctgctttatgcctc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 atgtcttcctcagtccatctatggctgcagcctctccctcttttacctgctttatgcctc 346

                                                                       
Query: 545 gacagtctccctaactctttatagacctcgaggcaactccggaagccacgcgggcaagga 604
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gacagtctccctaactccttatagacctcgaggcaactccggaagccacgcgggcaagga 286

                                                                       
Query: 605 ccatgtgtcctcctctctatggctagctgttaatattaaactggaaccggcaagcaaatg 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ccatgtgtcctcctctctatggctagctgttaatattaaactggaaccggcaagcaaatg 226

                                
Query: 665 agagacaaataccacaggtgg 685
           | |||||||||||||||||||
Sbjct: 225 aaagacaaataccacaggtgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no187_m03.g1 MSMg01no187_m03.g1 CHROMAT_FILE:
MSMg01no187_m03.g1 PHD_FILE: MSMg01no187_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:10 2005
         (132 letters)



>mm_chr5_149946464_149946995
          Length = 532

 Score =  230 bits (119), Expect = 2e-65
 Identities = 128/131 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   catacatccctctgcagccccaaggtctacattagcaagcatttcttcaataaggagagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 catacatccctctgcagccccaaggtctacattagcaagcatttcttgaataaggagagg 260

                                                                       
Query: 61  aaagagggacctccaaccaggctttccaggaaaacactagattgtggtagagggaggtgg 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 aaagagggacctccaaccaggctttccaggaaaacactagattgaggtagagggaggtgg 320

                      
Query: 121 gggaaggaaga 131
            ||||||||||
Sbjct: 321 aggaaggaaga 331


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 132
Length of database: 532
Length adjustment: 8
Effective length of query: 124
Effective length of database: 524
Effective search space:    64976
Effective search space used:    64976
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)