BAC Information

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BAC

Clone NameMSMg01-188P20
Chromosome5 (Build37)
Map Location 152,066,458 - 152,066,746
singlet/doubletsinglet
Overlap genenone
Upstream geneFry, LOC100042068, Gm5, XM_359419, Brca2, B230342M21Rik, BC037393, Aprin, LOC100040180, Kl, LOC667510, Stard13
Downstream geneLOC630708, LOC625175, LOC100042166, EG435877, EG632649, EG632671, Rfc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188P20.T7 (MSMg01no188_p20.b1)MSMg01-188P20.TJ (MSMg01no188_p20.g1)
ACCAG379825AG379826
length744768
length of high quality
(start - end)		318 (45 - 362)289 (78 - 366)
definitionCHROMAT_FILE: MSMg01no188_p20.b1 PHD_FILE: MSMg01no188_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:50 2005CHROMAT_FILE: MSMg01no188_p20.g1 PHD_FILE: MSMg01no188_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCAGCCCATTGGGCTGGGCTGCCCTTCCTCCAGCTTCCCTTCGCT
ATATAATCTAACCATTTTAGTTACCTAGTCTCTTTTTGTACCTTTGGGCC
TCCTGGCTGCTGGTTCCCCTCTCTCTCCTCTCTCTCTTCCCTTCCCCCCT
CTCCTCGAATGGCTCAGGGTTATGTCTACTTTGGACCCTCCCAGATGTTC
CCACCTTCTTCCATGTCAACAATGAACCATCTCCTCCACCATGCCTCACT
GGGATCAGGCACATTCCTTTCCCTTTTTATTCTTTCAGAACCCACATGAG
ATGAACAGGGATTTTGAGAGCCCGCCCTCCTGCAAGCTACCCTCTGCCCT
TCACATGCTACACTCTGCGGCACGAAGGCCCCAAAACCCATAGGCACACA
AATAAAAGCCAAAATAAATATAGAGCCGGCAGAAGTTGACCACTAGGTAG
TGATCTGCCAAAGGCAAACACGAATTTGATTCCAGTCACTCTTCTTCCCT
TTGCCTTTTACACAAATGCAATGACTTATCCTTAATTGAAATACCAACAA
AGAATGTTATTTCTGCGATTGCCTAATTCCACACCAAGGTCCAATGCATT
TGAATGTGAGATTTCAACAGTTCTGCTGCATGTCCACTAAAAGCCTGTGA
AGAGCTTCTCCCCCCACCCCGAATCTCAAAACCAAACGGGCAAN

TCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTGGATTATTTCTTTTATGTTG
TCTATAGTTTATGATGGGAGAAGTATCCGAAACCTTTAATTTTAATTTAA
CAGCCAAAGTAAATATATAAGACAGAATCATGGGGAGGGGGGGATACAGC
AGCTAGAAGTCCTGGCTTAGCCATCTCCTGTCACCTAAACCCAAACGCTT
GCCAGCCCTCCCTGCAACATTCTTCTGCCATCACACGCTGATGAGACAGG
GAAGAGCTCCCTACCCGCTCTGTGCTGGTTAACCAACTGGATTCCTATTT
GTTAGCTACAGACTGCTTATGCAGCCTCGCCCCCCCCACTTTTGAAGGGT
TAGCATGTGATGTGTAGTCCCCCCCCCCAAAGAGAAAAAATCAGTCACTG
CGGTATGACTGACACATGTCCCTATCTGCCATTGATGTGAGGATTGCTCT
CTGACTCCATTCTAATCTCTACCTGCCGATCTCGTTCAACATACTACTTA
TTAGTTTATTTACCCCCCCGGGATAGTCCAATCTATATTTGCCCTTGCCC
CTATCGCCCCATTTCTCTCTCCCCCCCTATTTTCCCCTAATGTCTTTTGT
TTCCCCTTATAATCATAGTGCTTTCCCTCACCCCCTTCTATTGTTTATTT
ATTCACCCCTTTTCCTCTATTTCACCCCCCCCGTCTTTTAAATACCCCGC
GTTCTTTTCTCACGTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_p20.g1 MSMg01no188_p20.g1 CHROMAT_FILE:
MSMg01no188_p20.g1 PHD_FILE: MSMg01no188_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:50 2005
         (289 letters)



>mm_chr5_152066258_152066946
          Length = 689

 Score =  520 bits (269), Expect = e-152
 Identities = 284/289 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attggattatttcttttatgttgtctatagtttatgatgggagaagtatccgaaaccttt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 489 attggattatttcttttatgttgtctatagtttatgatgggagaagtatttgaaaccttt 430

                                                                       
Query: 61  aattttaatttaacagccaaagtaaatatataagacagaatcatggggagggggggatac 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 429 aattttaatttaacagccaaagtaagtatataagacagaatcatggggagggggggatac 370

                                                                       
Query: 121 agcagctagaagtcctggcttagccatctcctgtcacctaaacccaaacgcttgccagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 agcagctagaagtcctggcttagccatctcctgtcacctaaacccaaacgcttgccagcc 310

                                                                       
Query: 181 ctccctgcaacattcttctgccatcacacgctgatgagacagggaagagctccctacccg 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ctccttgcaacattcttctgccatcacacgctgatgagacagggaagagctccctacccg 250

                                                            
Query: 241 ctctgtgctggttaaccaactggattcctatttgttagctacagactgc 289
           |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 249 ctctgtgctggttaaccaactggattcctatttgttagctacaggctgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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