Query= MSMg01no189_j16.b1 MSMg01no189_j16.b1 CHROMAT_FILE:
MSMg01no189_j16.b1 PHD_FILE: MSMg01no189_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:37 2005
(325 letters)
>mm_chr5_130189911_130190635
Length = 725
Score = 543 bits (281), Expect = e-159
Identities = 311/321 (96%)
Strand = Plus / Minus
Query: 5 gaattcaatctttaatctctgctgcctctcattttactatgtgcagtttttatacaagcc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gaattcaatctttaatctctgctgcctctcattttactatgtgcagtttttatacaagcc 466
Query: 65 acatggcaccttgtgtgttttgctaattaaatatctcttttgcacttaccaccaaacctc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 acatggcaccttgtgtgttttgctaattaaatatctcttttgcacttaccaccaaacctc 406
Query: 125 atgacctgaattccatccttggaatcccatcaggaataattgaataaatataataatctg 184
|||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 405 atgatctaaattccatccttggaatcccatcaggaataattgaataaacataataatctg 346
Query: 185 ttacaattttttaaaaaaatgtacaagactacaccagaatggaatcacccatgctaaacg 244
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ttacaatttttaaaaaaaaagtacaagactacaccagaatggaatcacccatgctaaacg 286
Query: 245 acctataatcaaaggaagcttcaaaaggaaccagttatggtccagccaggtaactcagca 304
|||| ||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 285 acctgtaatcaaaggacgcttcaaaaggaaccagttatggtccagcgaggtgactcagca 226
Query: 305 agtaagggtgcttgatgctga 325
|||||| ||||||||||||||
Sbjct: 225 agtaagagtgcttgatgctga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space: 226256
Effective search space used: 226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no189_j16.g1 MSMg01no189_j16.g1 CHROMAT_FILE:
MSMg01no189_j16.g1 PHD_FILE: MSMg01no189_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:37 2005
(619 letters)
>mm_chr5_130177250_130178269
Length = 1020
Score = 1004 bits (519), Expect = 0.0
Identities = 592/639 (92%), Gaps = 36/639 (5%)
Strand = Plus / Plus
Query: 1 tgtaggggcgagatcctcactcagagagacaaggtttctgtagttctccaccatcacatt 60
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 198 tgtaggggagagatcctcactcagagagacaaggtttctgtagttttccaccatcacatt 257
Query: 61 tctatacaaattccaccaagcagggtctaagcattcctgctcttctggagagaaatcaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tctatacaaattccaccaagcagggtctaagcattcctgctcttctggagagaaatcaac 317
Query: 121 ggagacatccttgaatgacagcagctcctgaaattaaaaaaaaa---------------- 164
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ggagacatccttgaatgacagcagctcctgaaattaaaaaaaaaaaaaaaaacaaaaaaa 377
Query: 165 ----aaaaaaaaaaaaacagcatgatgaccgtgatgaccatgtgacatcaggtgctaggg 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aaacaaaaaaaaaaaaacagcatgatgaccgtgatgaccatgtgacatcaggtgctaggg 437
Query: 221 gtgtagcttttgatgtcatcgctcatgctgtgatgagttttcagagctgtatctgcttct 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gtgtagcttttgatgtcatcgctcatgctgtgatgagttttcagagctgtatctgcttct 497
Query: 281 tggtcctcctcactcctgtaatgcttcatccatactccccacaagtaacccaaatgaact 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tggtcctcctcactcctgtaatgcttcatccatactccccacaagtaacccaaatgaact 557
Query: 341 cgctgtctcactacactgaacttagtgagtcctggagttgtttccttgtctgtgattggt 400
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 558 cgctgtctcactacactgaactcagtgagtcctggagttgtttccttgtctgtgattggt 617
Query: 401 accctgctggggtgagcaagcacctagtcacatttccacatgaagagtcaaacagcacaa 460
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 618 accctgctggggtgaacaagcatctagtcacatttccacatgaagagtcaaacag----- 672
Query: 461 aggaccaaacgtgagcttgagaagagtcgttgagtgtcccagcaacagatgataagatgt 520
|||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 673 -----------tgagcttgggaagagtcgttgaatgtcccagcaacagatgataagatgt 721
Query: 521 gcaactagagttgatctgtgagtgggttgtccatggaggccatctcactatggccacctt 580
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 722 gcaactggagttgatctgtgagtgggttgtccatagaggccatctcactatggccacctt 781
Query: 581 gtccctcctggtagaggatgatgcgcctccctgctgtgg 619
||||||| |||||||||||||||||||||| ||||||||
Sbjct: 782 gtccctcatggtagaggatgatgcgcctccttgctgtgg 820
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1020
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1010
Effective search space: 615090
Effective search space used: 615090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
