BAC Information

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BAC

Clone NameMSMg01-189K14
Chromosome5 (Build37)
Map Location 77,857,364 - 77,857,643
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665065, EG639545, Exoc1, Cep135, LOC100039117, A730089K16Rik, LOC665107, LOC100039299, C530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics, Srp72, Arl9, 1700023E05Rik, Hod, Spink2, Rest, 2610024G14Rik, Polr2b, Igfbp7
Downstream genePea15b, LOC669227, LOC100039398
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189K14.T7 (MSMg01no189_k14.b1)MSMg01-189K14.TJ (MSMg01no189_k14.g1)
ACCAG380269AG380270
length698744
length of high quality
(start - end)
315 (45 - 359)281 (77 - 357)
definitionCHROMAT_FILE: MSMg01no189_k14.b1 PHD_FILE: MSMg01no189_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:41 2005CHROMAT_FILE: MSMg01no189_k14.g1 PHD_FILE: MSMg01no189_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:42 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTCTGTAGACCAGGCTAGAACTACTGCTGCCTCCTGAGTGCTGAG
ATTAAAGGCATGTGCCTCCACTGTCCCTGAACTTTCTTAATTTAACTGTT
TAGAATATTTCAAAATGAAAGCCAAACAGATAGTGCTTTTTCACAGCAAC
TTTGAACTTCTGTTTGCTAAGAGTAAAATGCATAAAAGCTGACAGGCACA
AATCCCCAATATTAAACACATGCACATGTGTATGCCCATACACATGCACA
TACAAACCACTCACAAACAAATGAATAACCCAGGCAGCCGAGCTGAAGAA
AGCAACAGTGGTTTTATCTCCTGCCCCCCACTTCTGCATGCCTGGCTGCT
GGATCCTGCATGCACAGTCTTTCCTGAAACTTCTTAACCTTATGGTGTCT
TAGGCCTTTCAAAAGCAGACAAGCTTTTCAATTCATGGTTTGGGGTCGTC
TCAGGTACTGACCAGGTTTGCACAACGCTCAATGGCATTTCTTAAATAGT
TTACACTTGAATATAGCTTGTCTTTATTTTGTGCTTTATGCTGTATTTGA
GAGGAATGTAGCATTTCTATCTCTCTAAACACACACTCACACACAGGCAC
TTTACATTTTGAACTGCTAAACTGCTGGNATCATAAACCCTCTTTTCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGAAGTTAAAAAAGAGCTCATGG
GAGCTCTGGAGGAGATTCGTGTTCTAGAGCCTAGAATGGGGCAACGCTGG
GGCAGTGCAGCCAGAGACCAGGACTGCAAAGCTTCTCTTTAAAATAACTG
TAATGAGCCTCTCTTCCTTAGAAAATAATGGGGTTTTTATGGGTGTTGCC
AGAATAAGAAAAAATGCAGAGCCAATTAAAAAAAAAATTCTAGTTCAGAA
TAAACAACTCAAAATAGACTTGCCAATTGGGGCATGTGTGTGTGTAGGCC
AAAGTGTATTTTGTTATACCCCCCCCCCCCGAAAAGACTTAGGTTTTATT
AGGACAGAGAAGGCCATGTGTTGTTTAGAAAGGAATCTCTGTATTGGGGG
GTCAAAGCTAGCAAGCACTGATTGTCCAGTGTCAGCAGTTACACATAAGA
TCATAGTCACGTCCATCGTCAGTTGCAATGTACAGCTTATGCCAGCTGTT
TCATTGGCTTGGTCTGAACAGACATTCCCTGAACCCGTTCGCTGTTACCT
AAGAGGCCCTCTTGGTTCCACCTTACTATACTGTGCTAGGACTGATTCCA
TTTTTGCGACCTTGTTTCCATACCCCTAAACCCCTTCCCCGTCTATTAAC
GCTTACCCGACTCTACATTTCCAATTCTCTGTTCGCTTTCCCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_k14.g1 MSMg01no189_k14.g1 CHROMAT_FILE:
MSMg01no189_k14.g1 PHD_FILE: MSMg01no189_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:42 2005
         (281 letters)



>mm_chr5_77857164_77857844
          Length = 681

 Score =  427 bits (221), Expect = e-124
 Identities = 266/281 (94%), Gaps = 2/281 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaagttaaaaaagagctcatgggagctctggaggagattcgtgttctagagcctagaa 60
           ||||| |||||||| |||||||||||||||||| ||||||  ||||||||| ||||||||
Sbjct: 480 cagaaattaaaaaatagctcatgggagctctgggggagatgggtgttctagcgcctagaa 421

                                                                       
Query: 61  tggggcaacgctggggcagtgcagccagagaccaggactgcaaagcttctctttaaaata 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 420 tggggcaacgctggggcagtgcagccagagaccaggactgcaaagcttctctttaaaaca 361

                                                                       
Query: 121 actgtaatgagcctctcttccttagaaaataatggggttttta-tgggtgttgccagaat 179
           |||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 360 actggaatgagcctctcttccttagaaaataacggggtttttaatgggtgttgccagaat 301

                                                                       
Query: 180 aagaaaaaatgcagagccaattaaaaaaaaaattctagttcagaataaacaactcaaaat 239
           || || |||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 300 aa-aacaaatgcagagccaattaaaaaaaaaattctagctcagaataaacaacacaaaat 242

                                                    
Query: 240 agacttgccaattggggcatgtgtgtgtgtaggccaaagtg 280
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggacttgccaattggggcatgtgtgtgtgtaggccaaagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)