BAC Information

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BAC

Clone NameMSMg01-189M22
Chromosome5 (Build37)
Map Location 83,440,060 - 83,440,380
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433912
Downstream geneLOC100039434, Srd5a2l2, LOC100039608, LOC231368
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189M22.T7 (MSMg01no189_m22.b1)MSMg01-189M22.TJ (MSMg01no189_m22.g1)
ACCAG380366AG380367
length723754
length of high quality
(start - end)
321 (45 - 365)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no189_m22.b1 PHD_FILE: MSMg01no189_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:52 2005CHROMAT_FILE: MSMg01no189_m22.g1 PHD_FILE: MSMg01no189_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGGACAGCCAGGGCTACACTGAGAAACCCTGTCTCAAAAAATCAA
AAAAAAAAAAAAAAAAGAATTTAATGTTTTAAATTTTTTCCAACTCAAAA
TTATAAAGTGGGAATGGCAAAACCAAAGCATAAGATTACAGGTAGTTTCC
ATTCTTTTATAAATAATAGCAATTCTGAAATAAACCTAAGTATTGTTCAT
GTTGCCTATATTATATTTAAAAAAATAGAAACTTTATTATTTTAAAGCTT
CACGTGCATATTAATATAATGGATTTTTAGTGTTTTCCCTAGATCCTGAA
CAGAGATTTTCAAGATANTTTTATTACCATTCTTGCCGCTGTTGTTGTTT
GATTAGTCTCTGTGTATTTGTATGTGTGAATAAACAAAAAATTATACTTC
CTTGCTATACCTCCATTCCTCTTATATGTAGAGTGCTTACTCAGTATAAA
AATTGTCATTTATTTTTTTAAAGTAAATAAATGAATGAGTACATGCAATT
CTTTGTTTAGTGTGAGAATCAGCAAAAGAGAGAGGAGCACAGAGAAAGAT
AGACCTAGAGAGACTACNAGAGAGAGAAAGCTCTCCCATGCATGTTATGG
TTTAAATGTGTGTGTATGTGGGTCACATATCAACTTTGAGGAGACATCTA
CTTCCAATATTGGCTGGAAGAAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAGAAAATGAAGGCACAGAATAC
CCAAACTTATGGAGCACAATGAAAGCAATGAGTGCTAAGAGGAAAGTTCA
TAGCACCAAGTACCTTCATAAAGACATCACAGAGATCCTGTACTAGCAAA
TTAATAGCACACCTGACAGCTCTAGAACCAATAAAAGCAAACACAACCAG
AAAGTCTAAATGGCAATAATCAAGCCATAAATTAGAAACAAAAGGAACAA
CACAAAGAATCAGCAAAACTAAGAGCTGCTTCTTTTAGATAATCAACAAC
ATCAACAAACCCTTGGTTTTTTAACCCCCCCCCCAGATAATATCCACATT
AACAAAATCATAAAGTAAAAGGGATGTGCAACAACACAAACTGGGGAAAT
AAAAGACAAAAATAATTGTATCTTAATTCCAAAGTCTCTACTCCACAAAA
CTGGAAAATCTAGATAAAGTTGATAATTTTCTAGAGAGATACAATGTACC
AAAGTTAAATCAAGTTCAGGTAAACTATTTGAACAGAACAATAACCCCAA
AGGAAAGAGAATCAGTGATTAATAGATTCCCAAACAAACAAACAAATAAA
TCTCAGGGCCAGATAATTTTAGTACATAATAGAGGTCTACCAGACTTTCA
AAGAAATGCTTATAATAATATTCCTCAAACTATTCCAAAAAATCGATGCA
GAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_m22.b1 MSMg01no189_m22.b1 CHROMAT_FILE:
MSMg01no189_m22.b1 PHD_FILE: MSMg01no189_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:52 2005
         (321 letters)



>mm_chr5_83439858_83440578
          Length = 721

 Score =  513 bits (265), Expect = e-150
 Identities = 306/325 (94%), Gaps = 12/325 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggacagccagggctacactgagaaaccctgtctcaaaaaatc------aaaa 58
           ||||||||||||||||||||||||||||||||||| |||||| |||||||      ||||
Sbjct: 203 gaattccaggacagccagggctacactgagaaaccttgtctcgaaaaatcaaaaaaaaaa 262

                                                                       
Query: 59  aaaaaaaaaaaaaagaatttaatgttttaaattttttccaactcaaaattataaagtggg 118
           ||||||||||||||||    |||||||||||  |||||||||||||||||||||||||||
Sbjct: 263 aaaaaaaaaaaaaaga----aatgttttaaaaattttccaactcaaaattataaagtggg 318

                                                                       
Query: 119 aatggcaaaaccaaagcataagattacaggtagtttccattcttttataaataatagcaa 178
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 319 aatggcaaaaccaaagcataagattacaggtagtttccattcttttataaatgatagcaa 378

                                                                       
Query: 179 ttctgaaataaacctaagtattgttcatgttgcctatattatatttaaaaaaa-tagaaa 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 379 ttctgaaataaacctaagtattgttcatgttgcctatattatatttaaaaaaaatagaaa 438

                                                                       
Query: 238 ctttattattttaaagcttcacgtgcatatta-atataatggatttttagtgttttccct 296
           ||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||
Sbjct: 439 ctttattattttaaagcttcatgtgcatattacatataatggatttttagtgtttaccct 498

                                    
Query: 297 agatcctgaacagagattttcaaga 321
           |||||||||||||||||||||||||
Sbjct: 499 agatcctgaacagagattttcaaga 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)