Query= MSMg01no190_g24.b1 MSMg01no190_g24.b1 CHROMAT_FILE:
MSMg01no190_g24.b1 PHD_FILE: MSMg01no190_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:41 2005
(319 letters)
>mm_chr5_69047325_69048043
Length = 719
Score = 567 bits (293), Expect = e-166
Identities = 313/327 (95%), Gaps = 12/327 (3%)
Strand = Plus / Plus
Query: 5 gaattctacaggttactcagtacagtaggaaatctttgtcatatttctcttcataactgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gaattctacaggttactcagtacagtaggaaatctttgtcatatttctcttcataactgt 252
Query: 65 gcttaaaattcatttctttcttcatatgcaatgtagatacaaagcttaatgcagcccatt 124
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 253 gcttaaaattcatttctttcttcatatgcagtgtagatacaaagcttaatgcagcccatt 312
Query: 125 gataactatttataaacttagacatttgagtaagattgtggcagtttttttttttttttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gataactatttataaacttagacatttgagtaagattgtggcagtttttttttttttttt 372
Query: 185 tt------------gcttccaaatcctggtgacccattcttaatgttcaagggacatttc 232
|| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ttttttttttttttgcttccaaatcctggtgacccattcttaatgttcaagggacatttc 432
Query: 233 catgtcctctctgagaagtgtaagattctgctccacagactaattaaatacttctacatt 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 catgtcctctctgagaagtgtaagattctgctccacagactaattaaatacttctacatt 492
Query: 293 ggataagtcaattttatttgagaacaa 319
|||||||||| ||||||||||||||||
Sbjct: 493 ggataagtcagttttatttgagaacaa 519
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space: 220100
Effective search space used: 220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no190_g24.g1 MSMg01no190_g24.g1 CHROMAT_FILE:
MSMg01no190_g24.g1 PHD_FILE: MSMg01no190_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:41 2005
(284 letters)
>mm_chr5_69100508_69101191
Length = 684
Score = 528 bits (273), Expect = e-154
Identities = 279/281 (99%)
Strand = Plus / Minus
Query: 1 tctgaaaccctgcaatgaacaggtgggtgccttgaattgaatgaccacagtttggtcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tctgaaaccctgcaatgaacaggtgggtgccttgaattgaatgaccacagtttggtcaaa 422
Query: 61 tctaagagacagccatgaataaattccaagttatcagactggaagtctgagaaaaaaaat 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tctaagagacagacatgaataaattccaagttatcagactggaagtctgagaaaaaaaat 362
Query: 121 agtttaaaatgttagagaattgtagctcagaggacatgatggattaaagaaaatggatta 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agtttaaaatgctagagaattgtagctcagaggacatgatggattaaagaaaatggatta 302
Query: 181 tttcagagtcacttcagctaccacaagatggaacagtcatccctttgacagataaggata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tttcagagtcacttcagctaccacaagatggaacagtcatccctttgacagataaggata 242
Query: 241 gttcatggctgagaagcacctctaatttatataaccacata 281
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gttcatggctgagaagcacctctaatttatataaccacata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
