BAC Information

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BAC

Clone NameMSMg01-191B10
Chromosome5 (Build37)
Map Location 111,065,472 - 111,153,189
singlet/doubletdoublet
Overlap geneNoc4l, Ddx51, Ep400
Upstream geneLOC624831, LOC100041734, LOC100042749, LOC667198, 4930522L14Rik, LOC667243, Plcxd1, Gtpbp6, LOC675812, Chfr, Golga3, D5Ertd585e, Pgam5, Pxmp2, Pole, P2rx2, Gm1679, 2410025L10Rik, Galnt9
Downstream genePus1, Ulk1, Hscb, Chek2, Ttc28, Pitpnb, Mn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191B10.T7 (MSMg01no191_b10.b1)MSMg01-191B10.TJ (MSMg01no191_b10.g1)
ACCAG381224AG381225
length722732
length of high quality
(start - end)		315 (45 - 359)284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no191_b10.b1 PHD_FILE: MSMg01no191_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:34 2005CHROMAT_FILE: MSMg01no191_b10.g1 PHD_FILE: MSMg01no191_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,152,881 - 111,153,189)(111,065,472 - 111,065,737)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTGACAATGGGGTTGTAAGATGTGTCTTGTTCTTCCTGTCCAGTG
GTTCTGCCCAGTAGTTCAGATTGTTGGGTATTGCTGTTAACACCTTAACC
CTATACACTGTTTCCACACATAAACATGTCATCAGTTACTTGTTTATTCC
AATAGTGCTGCTGTCGGTGGTGTTTGTACACAAACGGCTCTATGTATGTC
AGTGGTGGCACATGATTGGTCTGTAGAATCATACAGTTGGCTCAAACATG
TATTCTTGGTTTGCTAGAGTATATGTGGAGTTAACACAACTTCAACCCTC
TGGCTTATTTATTTGCACAGCCCTCCCTTGTAACTATGGCTACACCAAGA
AGGTGAAGCCTTCAAGAGGCTTGAAGTGAGCAGATGGGAGGAATGTACTT
CTTAGACAGGTTCTCACCGGTTGATGGGGGTTTTCTAAGCCTGGACTGGT
TTCTAGAGTAAGTATTAGGACAGACCAAGCCAGCCCTGATCAGTGTGGAG
AGTGTACTATCATGAGGGAAGCAGGGTTGCTGGACCTTCCCTTGATTAGG
ATTGAATCTAATCATTGATCTAGATTCATGATCTAAATTCAACACCATGC
TCCTCGGTTAACTAGTTGAAATTTTCATCTTAGGCCTTGACTCTAAGATT
AACCTTGACATCAAATTTTAAA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACACTGAG
AAACCCTGACTTAAAACGCCACCCCCAAAGAGAGGTCACATGAATAAAGC
TCTCAGAAGTGCAAGCTGTATACAGTCTCATGGATAAGCCACATGTGGTA
AAGATATGTTTTTTTTTAATAGCGGCATATAGACATGTAATGGAATAACA
TGTAATTGAATAACAGCAGCAAACAATAATGAGTAATCTGAAGGAAGCTC
ACTCCTTTCTGCTACACCTGGGAGGAGGAGCATGAAAACACATTCCAAGA
ACAATTCCTTGTTGTGACCCCCACCCCCCCTCACAGGACCCTGTCTTCTC
GGAGTCTTCTCACAAGGACTCAGCGTTCCCTTCATGTGACTTCATTCCCG
GCCCGTGCAGACCTGTGCCAGCTCCAGCAGGCCACGGAGTGTGAAGATGA
AGAATGGGCCCCCATCTGGTGGCCACAGACACACACCTCTGTCACATCTT
TAACGTTCAACCGATGTCCAAGAATCTTGTTTCCAATAAACCAGAAAGGA
GCCTCCAAGCCTCCAGGAAATGAAGCAAATGCTTGTTCATAGATTCAAGA
TGGAATCCATAAAGCAGTGGCAGACACCGGTAGCCAAGCAGGTTGTCAAA
TGTGAAGAAAGTGGGCGTTCATCACTCCTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_b10.b1 MSMg01no191_b10.b1 CHROMAT_FILE:
MSMg01no191_b10.b1 PHD_FILE: MSMg01no191_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:34 2005
         (315 letters)



>mm_chr5_111152677_111153391
          Length = 715

 Score =  598 bits (309), Expect = e-175
 Identities = 309/309 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttgacaatggggttgtaagatgtgtcttgttcttcctgtccagtggttctgcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gaattccttgacaatggggttgtaagatgtgtcttgttcttcctgtccagtggttctgcc 454

                                                                       
Query: 65  cagtagttcagattgttgggtattgctgttaacaccttaaccctatacactgtttccaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 cagtagttcagattgttgggtattgctgttaacaccttaaccctatacactgtttccaca 394

                                                                       
Query: 125 cataaacatgtcatcagttacttgtttattccaatagtgctgctgtcggtggtgtttgta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 cataaacatgtcatcagttacttgtttattccaatagtgctgctgtcggtggtgtttgta 334

                                                                       
Query: 185 cacaaacggctctatgtatgtcagtggtggcacatgattggtctgtagaatcatacagtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 cacaaacggctctatgtatgtcagtggtggcacatgattggtctgtagaatcatacagtt 274

                                                                       
Query: 245 ggctcaaacatgtattcttggtttgctagagtatatgtggagttaacacaacttcaaccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ggctcaaacatgtattcttggtttgctagagtatatgtggagttaacacaacttcaaccc 214

                    
Query: 305 tctggctta 313
           |||||||||
Sbjct: 213 tctggctta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no191_b10.g1 MSMg01no191_b10.g1 CHROMAT_FILE:
MSMg01no191_b10.g1 PHD_FILE: MSMg01no191_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:34 2005
         (284 letters)



>mm_chr5_111065272_111065957
          Length = 686

 Score =  433 bits (224), Expect = e-126
 Identities = 261/284 (91%), Gaps = 20/284 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagccagggctacactgagaaaccctgacttaaaacgccacccccaaagagaggt 60
           |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 cagggcagccagggctacactgagaaaccctgacttaaaatgccacccccaaagagaggt 260

                                                                       
Query: 61  cacatgaataaagctctcagaagtgcaagctgtatacagtctcatggataagccacatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacatgaataaagctctcagaagtgcaagctgtatacagtctcatggataagccacatgt 320

                                                                       
Query: 121 ggtaaagatatgttttttttt--aatagcggcatatagacatgtaatggaataacatgta 178
           |||||||||||||||||||||  ||||||||||||||||||||||||             
Sbjct: 321 ggtaaagatatgttttttttttaaatagcggcatatagacatgtaat------------- 367

                                                                       
Query: 179 attgaataacagcagcaaacaataatgagtaatctgaaggaagctcactcctttctgcta 238
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 --tgaataacagcagcaaacaataatgagtaatctgaaggaagctcactcctttctgcta 425

                                                       
Query: 239 cacctgggaggaggagcatgaaaacacattccaagaacaattcc 282
           | ||||||||| ||  ||||||||||||||||||||||||||||
Sbjct: 426 cccctgggagg-gg--catgaaaacacattccaagaacaattcc 466


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 686
Length adjustment: 9
Effective length of query: 275
Effective length of database: 677
Effective search space:   186175
Effective search space used:   186175
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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