BAC Information

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BAC

Clone NameMSMg01-191B12
Chromosome5 (Build37)
Map Location 18,464,385 - 18,464,693
singlet/doubletsinglet
Overlap genenone
Upstream geneGnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191B12.T7 (MSMg01no191_b12.b1)MSMg01-191B12.TJ (MSMg01no191_b12.g1)
ACCAG381228AG381229
length735736
length of high quality
(start - end)
312 (45 - 356)282 (78 - 359)
definitionCHROMAT_FILE: MSMg01no191_b12.b1 PHD_FILE: MSMg01no191_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:34 2005CHROMAT_FILE: MSMg01no191_b12.g1 PHD_FILE: MSMg01no191_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATATCCTATTTTCTTTCTGTTATATTTTAAGATTTGTCTCATCTGG
AAAGACTTGACTTCATCATGGTCCTAAGGAATTCCTGTCCTTTCACTTAA
TACCAGCCTCCCTATCTCTTTCTTTCTACTCCATTTTTCCTCACTCCTTA
TAAATCTTGCTGTTGTCTGGTGAACCTTAAACGCATTGGGTCATACTGTC
TGAGCATAGCTCTGTTCTCAATTTTTTTTGTACATGATCCTGGAAAATTA
ATATATGTAGCATCAAGTTGCACACTAGACAGAAAAAAATTCATAAAGAT
CAAAATATTGAAGTTGACACACCTTTGGATTTTAAAAACTATTTTCAATT
CACATTTCATTTAAATTCATTATAGATATAATATATATGTATATTATATA
TATATATTGTCATTAATGATTGGAAGGGTGCAAATGTCATTTTAATATAA
GAAAATTATTTTTTTATGACTAGAGTTTGATAGAATATGTTTTCATAGAC
ACTTCTGAGTGCAAATCACTTCCTTGACTTTGGTCATTATTTTTCATTCC
CAGTTTTCCCTAAACTGCTTAATATACTTGCAGTAATAACATGAGTCAAA
TAATTTGAATTTAGTCAATATCCTTTTTTCCACCCATACCTTGTAACGTG
ACTAAAACTTTTCAAGTCCCATCTTGGATTTATAG
CGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCACGTAAAACCAGAGACACTGAA
AGTTATAGAGGAGAAAATGGGGAAAAGCCTCGAATATATGGGTATAGGGA
AAAATTTTTGAACAAAACAGCAATGGCTTTTGCTGTAAGATCCAGAATCC
ACAAATGGGACCTCATAAAATTGTAAAGCTTCTATAAGGCAAGAGACACT
GTCAATAAGACTAAAAAAGCCATAAACAGATTGGGAAAGGATCTTTGCCA
ACCCTAAATCTTATAGGGGACTAATATCCAATATATACAAAGAACTCAAG
AATATGGACTCCTTTAAATACCCCTACCACTATTTAAAAATGGGGTACAG
GGCTAAACAAAGAATTCTCAATTGAGAAATACCGAAGGGCTGAGAAGCAC
CTGAAAAAAGTTCAACATCCTTAATCAACAGGGAAATGCAAATCAAAACA
ACCCTGAAATTCTATTACACACCAGTCAGAATTGGTAAGATCAAAACTTC
AGGTAACAGCAGATGCTGGCGAGGATATGGAGAAAGAGGAACACTCCTCC
ATTGCTGGTGCGATTATAAACTGGTACAACCACTCTGAAAATCAGTGTGG
TGGTTCCTCAGAAAATTGGACATAGTATTACCAGAAGATTCAGCAATACC
TCTCCTGGGCATATACCCAGAAGATGTTCCAACTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_b12.b1 MSMg01no191_b12.b1 CHROMAT_FILE:
MSMg01no191_b12.b1 PHD_FILE: MSMg01no191_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:34 2005
         (312 letters)



>mm_chr5_18464182_18464893
          Length = 712

 Score =  590 bits (305), Expect = e-173
 Identities = 308/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatatcctattttctttctgttatattttaagatttgtctcatctggaaagact 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatatcctattttctttctgttatattttaagatttgtctcatctggaaagact 263

                                                                       
Query: 64  tgacttcatcatggtcctaaggaattcctgtcctttcacttaataccagcctccctatct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgacttcatcatggtcctaaggaattcctgtcctttcacttaataccagcctccctatct 323

                                                                       
Query: 124 ctttctttctactccatttttcctcactccttataaatcttgctgttgtctggtgaacct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctttctttctactccatttttcctcactccttataaatcttgctgttgtctggtgaacct 383

                                                                       
Query: 184 taaacgcattgggtcatactgtctgagcatagctctgttctcaattttttttgtacatga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taaacgcattgggtcatactgtctgagcatagctctgttctcaattttttttgtacatga 443

                                                                       
Query: 244 tcctggaaaattaatatatgtagcatcaagttgcacactagacagaaaaaaattcataaa 303
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcctggagaattaatatatgtagcatcaagttgcacactagacagaaaaaaattcataaa 503

                    
Query: 304 gatcaaaat 312
           |||||||||
Sbjct: 504 gatcaaaat 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)