BAC Information

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BAC

Clone NameMSMg01-191K07
Chromosome5 (Build37)
Map Location 41,060,532 - 41,060,816
singlet/doubletsinglet
Overlap genenone
Upstream geneHs3st1, EG665839, LOC100040502
Downstream geneLOC208522, Rab28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191K07.T7 (MSMg01no191_k07.b1)MSMg01-191K07.TJ (MSMg01no191_k07.g1)
ACCAG381586AG381587
length1,618722
length of high quality
(start - end)
---283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no191_k07.b1 PHD_FILE: MSMg01no191_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:20 2005CHROMAT_FILE: MSMg01no191_k07.g1 PHD_FILE: MSMg01no191_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTCCGCTTTTTTNTNTTTTNTNNNTATACTNTCTNTNCGATANACACG
AATGCANCNCCGTCCTNCCCCCGCTTATCTCTCTCACACACGCGTCCGCC
TGACATCCGCCTCGNCGCACAGTCTATCTGCGGGCGGGCACGCATATTTT
GCCGGTACGCCGGAGTGCGCCGGCCTACGTCACATAGTAGTATCNGTGAT
GCGCTCTACGATGTGGATGAGTGTANCTCATAATACTGCAGCCCCAGCTG
TACCCTCCTTTGACNAGACGCGCGATATATGAACACCTGTTGTGTAATAT
ATTATTGATAGGTTAGCACAGCACTATTAGTCGCGCCGCGCGCGCCGTGG
CGCGACTCGTGCTGTAACGTATGCGTANTATCGCACGTTGCGCGACGCGG
ATGGTCGACGCCGCGTGCGACAACAGAAGAGTAGGAGAGAAATAGGTATA
TAGTGATCGGCGCCGCCAGTCCGCGTCGGCTAGATGCTGCGCACACCACG
ACACTTGACTACGTCGCCCGAGTCGACGAAGCTGGTAACCGCGCGCCGTC
TATATTGGATATNCTAAGTCCGGTTCAAGTACACAAAAATATCACACATT
ATCAACGCACAACAGCAGATCGACAACTCATGCCTGACCATCCACCACAA
ACGCGATCCGCCAGACAATACTTCTACATGACGCGTACAAAGATCACACT
CAACGCTCTCGCACTTACGAGAGCGATGNGATGGTAGTGAGATATATATG
AGACGATATANGTCGAAGATAGACTGTAGGATAGAGACACTATCATCGAG
AGGGCAGATCTACNTCGCCGTCATGTATTATGGGATATAGTCGCGNACAC
ACCGGCGCGCAGCCGCGCACCTACTGTTGCGCTGTTGTGAGCACGTCCCG
CGTGNGAGCAGTAGATGAACCATCGACACATATANTGAATATCCTCGTGT
ATCACCGCGAGCTAGAGGCGCCGCGGCGAGCGGTGTATGTATCGCCGGCT
TGCGTGAGCGCGATACGCGCTGCCGTGAGGCGCGTGCGCTCGTTATATAA
CAATTGGACNCCGTCTCGCTATCTATCATGATATATTCAACTTCACGATC
ATNCACCTCCATCGATAGCCGCTGACGTATTGCGCTAGTCTTAGCGCGCC
TCGGTATATATACGCCGGCGTCGCTCGTATTCGGTGCTTGTGCGTACTCA
TCCACGTGTGTGGCGCGACCGCTGTCGGCGGCGATGCTTCTGTAGTGTGT
ACGCCGCGTGTATATCTCACTCTGTTAGCCTACGCGCAGNTGTGTTACTC
TGTGAGACGGTGATGCAATAGATGTGACGACGATGCTGTCAGAGCGNCAC
GATACGCTAACGACGCGAATANACGGCTGATATATGCAGACGCGCGCNCC
GCGCGCCACGCGGCGGCGCGCANCTCGATATTGTATAATTTCACAGATAT
GGTAGCTGTAACGCGAACACACGAGCGGCACTAATATANCGCGGCGTATG
GTAGCAACATATGAGAGAGTAACGAGTGAGCGCGTGATATTACACGCGCC
ACGCGCTGTACGTGTNATCGATGAGTCGATCCGGATGTCCGNATACGCGA
TACGCGATCTGACGCACG
TGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTCATGAAGTTTTTATCTGGCCA
CAAGAAAAGAGTCCTTACTTTTTATGGGAGTTCTCATAATTTGGCAAAGT
AGAAGCAATATTCAATGAATAGTAAGTGTTGAGGTTACAGAATCCAGCTC
CCTTGTCTCTTGAGACTGGGTATTTTTTTTTAAGTACATCCAAAGTCTGA
AAGTGCACTTGTTTTATATAGTGCCTTTACAGCCTTTTCCTCTGCAGTTT
CTGTGATGTTGCTACCAAGAGTGAATGACACCCAGGGATCTACATAGTAA
TGAGACTATTGTTTTTGTTGACTCGCCCCACCCATTTTTCTTCTCTAAGT
GACATTATTAATTTATTCTTTGGAAGTTTTCACAAATGTACACAAGGTAT
CCTAATCGTATTCTGCCTTTTGCGTGCCCCTAGTCCCTCCTGACCTAAGG
CATTTCCTTTACAATTTCATTTCATTGTGTTATTCATACTCTTTTTATAA
ACCATTGAGTCTAATTTCTGTTACCTGCATGTGCAGAGGCATGAGGCCAT
GTACTGGAGCATGGATAATCAAACACAAGCCATATCCTCCAGAAAAAAAT
AACTCTACCACTGAAGCAGCAATCAACTGCCAATAGCTGCTCAGCTAAGG
TAGAGCCTTGTAAGCTGACTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_k07.g1 MSMg01no191_k07.g1 CHROMAT_FILE:
MSMg01no191_k07.g1 PHD_FILE: MSMg01no191_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:20 2005
         (283 letters)



>mm_chr5_41060332_41061016
          Length = 685

 Score =  516 bits (267), Expect = e-151
 Identities = 280/285 (98%), Gaps = 2/285 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcatgaagtttttatctggccacaagaaaagagtccttactttttatgggagttctca 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcatgaggtttttatctggccacaagaaaagagtccttactttttatgggagttctca 260

                                                                       
Query: 61  taatttggcaaagtagaagcaatattcaatgaatagtaagtgttgaggttacagaatcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatttggcaaagtagaagcaatattcaatgaatagtaagtgttgaggttacagaatcca 320

                                                                       
Query: 121 gctcccttgtctcttgagactgggtattttttttt--aagtacatccaaagtctgaaagt 178
           |||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 321 gctcccttgtcttttgagactgggtatttttttttttaagtacatccaaagtctgaaagt 380

                                                                       
Query: 179 gcacttgttttatatagtgcctttacagccttttcctctgcagtttctgtgatgttgcta 238
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcacttgttatatatagtgcctttacagccttttcctctgcagtttctgtgatgttgcta 440

                                                        
Query: 239 ccaagagtgaatgacacccagggatctacatagtaatgagactat 283
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaagagtgaatgacacccagggatctacatagtaatgagactat 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 685
Length adjustment: 9
Effective length of query: 274
Effective length of database: 676
Effective search space:   185224
Effective search space used:   185224
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)