Query= MSMg01no192_f06.b1 MSMg01no192_f06.b1 CHROMAT_FILE:
MSMg01no192_f06.b1 PHD_FILE: MSMg01no192_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:32 2005
(421 letters)
>mm_chr5_127116013_127116833
Length = 821
Score = 675 bits (349), Expect = 0.0
Identities = 399/431 (92%), Gaps = 27/431 (6%)
Strand = Plus / Minus
Query: 15 ggaattccaagg-gggaaattatttaaagaaaaaaaatgttgttattatcttagaagaaa 73
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ggaattccaaggagggaaattatttaaagaaaaaaaatgttgttattatcttagaagaaa 746
Query: 74 atcttactgtagtagatgtccctggaaaggcagggctacaaaacaatggtatatatataa 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atcttactgtagtagatgtccctggaaaggcagggctacaaaacaatggtatatatataa 686
Query: 134 caatcttcatc------------------------tgtgtgtgtgtgtgtgtgtgtgtgt 169
||||||||||| |||||||||||||||||||||||||
Sbjct: 685 caatcttcatctttctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 626
Query: 170 gtgtgtaatctgcccaaagatgccctcaagattacaatgtagctaaggatacatcaaatt 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtgtgtaatctgcccaaagatgccctcaagattacaatgtagctaaggatacatcaaatt 566
Query: 230 catagttctcaaacctactcaaacactctatggactgagccatatgctca-ccctccctc 288
||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||
Sbjct: 565 catagttctcaaacctactcaaacattctatggactgagccatatgctcagccc-ccctc 507
Query: 289 tgtatctttcattcctagtagttcttcactgagtttagagtcacctgctcacccactgaa 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tgtatctttcattcctagtagttcttcactgagtttagagtcacctgctcacccactgaa 447
Query: 349 cttaaacataagaagtactgttttatctgtcctagctattggttatgctcaaaggctttc 408
|||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||
Sbjct: 446 cttaaacataagaagtactggtaaatctgtcctagttattggttatgctcaaaggctttc 387
Query: 409 attcccactta 419
|||||||||||
Sbjct: 386 attcccactta 376
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space: 334544
Effective search space used: 334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no192_f06.g1 MSMg01no192_f06.g1 CHROMAT_FILE:
MSMg01no192_f06.g1 PHD_FILE: MSMg01no192_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:32 2005
(207 letters)
>mm_chr5_127009243_127009849
Length = 607
Score = 265 bits (137), Expect = 1e-75
Identities = 186/211 (88%), Gaps = 18/211 (8%)
Strand = Plus / Plus
Query: 4 gcaattatatttcgtgttactgaggccaccacggagaatgaacagaaatttaggtgcagc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gcaattatatttcgtgttactgaggccaccacggagaatgaacagaaatttaggtgcagc 263
Query: 64 tacaatgatgtcccatgatagaaatcctca--ggattaaaggacatcagtgatctcttac 121
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 264 tacaatgatgtcccatgatagaaatcctcatcg--ttaaaggacatcagtgatctcttac 321
Query: 122 ccaaagctttattcggattccgtacattgcatgaccaacaaaggtt---tgtg------- 171
||||||| | |||||||||||||||||||| ||||||||||||| | ||
Sbjct: 322 ccaaagcaggactcggattccgtacattgcattaccaacaaaggttatttttggagaagc 381
Query: 172 ca----ttctcatgattggagttgagggcct 198
|| ||||||||| |||||||||||||||
Sbjct: 382 caactattctcatgactggagttgagggcct 412
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 607
Length adjustment: 9
Effective length of query: 198
Effective length of database: 598
Effective search space: 118404
Effective search space used: 118404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
