Query= MSMg01no192_i11.b1 MSMg01no192_i11.b1 CHROMAT_FILE:
MSMg01no192_i11.b1 PHD_FILE: MSMg01no192_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:10:01 2005
(421 letters)
>mm_chr5_64490145_64490966
Length = 822
Score = 644 bits (333), Expect = 0.0
Identities = 394/421 (93%), Gaps = 16/421 (3%)
Strand = Plus / Minus
Query: 14 ggaattcagatgcctgatgcttc-cagcttacaatggtgacattatacctgactttccag 72
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 524 ggaattcagatgcctgatgcttcacagcttacaatggtgacattatacctgactttccag 465
Query: 73 gtcagcctttgagctgtgacctcaatgtgtcagggagcaaaaagcttatagcccaagtcc 132
|||||||||||||||||||||||||||||||||| |||||||| | | ||||||||||||
Sbjct: 464 gtcagcctttgagctgtgacctcaatgtgtcaggaagcaaaaatcatctagcccaagtcc 405
Query: 133 agattctcatacccctaacccttctagaaacttctgggtcctgtgaaggacgaggtccag 192
|||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 404 agattctcgtacccctaaatcttctagaaacttctgggtcctgtgatggacgaggtccag 345
Query: 193 aaaatagttgagggaaaggacactattccatgggggacgaaggagg-tattcagaattaa 251
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 344 aaaatagttgagggaaaggacactattccatgggggacgaaggaggct-ttcagaattaa 286
Query: 252 aatgctac--tatgaacaaaacaaaaacttgcatgacttcaaaatatataactaaagagc 309
|||||||| || ||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 285 aatgctacctta--aacaaaataaaaacttgcacgacttcaaaatatataactaaagagc 228
Query: 310 t---------aaaaaaaaaaaaaggatgggtttggaatgaaactaatgaagccatctttt 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 taaaaaaaaaaaaaaaaaaaaaaggatgggtttggaatgaaactaatgaagccatctttt 168
Query: 361 agaaattactttttaattatatccacacatgtgtttctgagtaagtgtatgtcatatgtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 167 agaaattactttttaattatatccacacatgtgtttctgagtaagtgtatgccatatgtg 108
Query: 421 t 421
|
Sbjct: 107 t 107
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 822
Length adjustment: 9
Effective length of query: 412
Effective length of database: 813
Effective search space: 334956
Effective search space used: 334956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no192_i11.g1 MSMg01no192_i11.g1 CHROMAT_FILE:
MSMg01no192_i11.g1 PHD_FILE: MSMg01no192_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:10:01 2005
(381 letters)
>mm_chr5_64440068_64440851
Length = 784
Score = 632 bits (327), Expect = 0.0
Identities = 367/383 (95%), Gaps = 7/383 (1%)
Strand = Plus / Plus
Query: 1 atcttctttca-cggagactttcaaaactgcccagcttgtactgagctctgtgctagggg 59
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcttctttcaacggagactttcaaaactgcccagcttgtactgagctctgtgctagggg 260
Query: 60 ttgatgggagcagagatgaagcaagcaagccacaggcctctcaaagctcaatgcaggtac 119
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgatgggagcaaagatgaagcaagcaagccacaggcctctcaaagctcaatgcaggtac 320
Query: 120 catgtgccctctcctccttcagatctgcattgagcttccccagctctcccaggggatcac 179
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 cttgtgccctctcctccttcagatctgcattgagcttccccagctctcccgggggatcac 380
Query: 180 ctcagccaggttaaggtacctgcagagctcctggtgtgcatcctttgtatcgatattttg 239
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 381 ctcagccaggttaaggtacctgcagaactcctggtgtgcaccctttgtatcgatattttg 440
Query: 240 gtcctcaggctgcttctgtcacg----gtgtgcgtacggacaatctgtgtaacttgattg 295
|||||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct: 441 gtcctcaggctgcttctgtcaccatttgtgtg--tatggacaatctgtgtaacttgattg 498
Query: 296 ttaagtgtatgcagtggctctagtcttgctgttttgcctgatcaggattaattggcactc 355
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 499 ttaagtgtatgaagtggctctagtcttgctgttttgcctgatcaggaataattggcactc 558
Query: 356 agtaaaaaaaaaaaaaaaaaaaa 378
|||||||||||||||||||||||
Sbjct: 559 agtaaaaaaaaaaaaaaaaaaaa 581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 784
Length adjustment: 9
Effective length of query: 372
Effective length of database: 775
Effective search space: 288300
Effective search space used: 288300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
