BAC Information

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BAC

Clone NameMSMg01-192K11
Chromosome5 (Build37)
Map Location 14,410,896 - 14,411,263
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
Downstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192K11.T7 (MSMg01no192_k11.b1)MSMg01-192K11.TJ (MSMg01no192_k11.g1)
ACCAG382262AG382263
length1,2761,528
length of high quality
(start - end)
425 (29 - 453)197 (68 - 264)
definitionCHROMAT_FILE: MSMg01no192_k11.b1 PHD_FILE: MSMg01no192_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:10:18 2005CHROMAT_FILE: MSMg01no192_k11.g1 PHD_FILE: MSMg01no192_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:10:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTTCATTGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTC
AGTAATAAATTTTACATCCTCCAATATTTATTTATTTTAAGTGCATATTA
TTTGTGCTTGACTGAATATGTGCATCATATGTAGGTAAGATCCATGGAGG
CCAGAATAAGGATTCTGAAATCCTAGAACTGCCGGTATAGATGGTTATGA
GCTACGGTATGTGTTTTGAAAACCAAATTCAGGTTCTCTGAAAAAGTTTC
AAGTACTTTTAATCACTGCATCATCTTTTCAACCCTAAATATAGTCACAA
GGAAATACATCTCTTCAAGTGAAGATAATTCCTAACCTAGAAAAATACTA
ACAAGATGGAAGTAACTATTATCTCCCAGAAACCAAAAATGTCTTTGAGA
TTATCTGGCTAGTGACAGAGAGCAAAGATCCCCAAATTGAAGTTATTATA
TGTTTTATTGCCCCCCCCCCCATGATAAGAGAAAATTGTCAAAAATTTTA
TGCCTGTAGCTCTAAGCTAGGGTAGGAATTTGTAACCAACTCCTATGCTA
GGAGACAACTGTGGCTGTTGTGAATTCATGTGTACAGCTGCACTTCTGTG
TCCTGAAGACACCAATTCTTTAAAGTCATCTACTGATTCTGGTCCATACT
CTTCTTGTTCTCCTTCCAGAAAAGCACACAAATCTTGAGAGGCTAGGGTG
TAGAGTATATGCTCCTTTTTAGAATGACCATTCTGTAGTCTTTTATTCTC
TTGGACATTTGTTAGTCCCTGTGGGTTTCAGTATATATTGCAAGTAGATT
CTTCTTCTGCTTACGTTGAAAAATGCTTTGATCTACTATATTCCAGGGTT
ATTTAACGGTTTACTCCGTATTCCTTTATCAAAAACATAATTATTTTTTA
TTTTGTTCCTATTTCTTTTATTTGTTTTTCTCTCATTTTTTTGTTTCCTC
TTATTTTCTTTTATCTCCTTCTTTTTATTTTTGTTTCTTCTTTTACTTTC
TTTTTCTTCTTTTTTTTTATTCTTACCCTCTCATTATCCTTGATCTTTTC
TCCTATTCTTCTTTTTCTTTTTTATCTTCTTCTTTGTTTTTTTTTCTCTT
TTCTAATTTATTTCTGTTCATATCTCCTTTTATATACTTACATTTCTCTT
ATTCCATCTTTNTTACTTATCATCCTTTTTTTTCTTTTCTTTTCATTACT
TTTTCTTTTTATCTATTTATTCTTTATTTCACATTTTTTCTTCCTCTAAC
ATCCTTGTTTTATTGTCCTCACTCTT
NNTTTGATAGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTATTGTTTGTATTTCCATTTTTAGATACTGG
ATGGTTTTTTTCAATTTCTTCACCTGTTTGTGTTTTCCTGTATTTCTTTA
AGGGATTGTTGTGTTCCTTTTTAAGGCCTTGTAACTGTTTGTTTACCTGT
GTTCTCATGTATTTCTTTAAGGGAGTTATTTCTGTCCTTCTTAAAGTACT
CTATCATCATCATAAGATGTGATTTGATATCAGAATCTTTATTTTCTGCT
GTGTTGCAGTTATCTAATATTTTTTTTGTAGTTTTAGCTTAATTCTTTAT
TTTATTTTTTATTTTTTGTATTTTTTTTGTTTAATGTTTTATTTTTTTTT
TTTTTCTTTCCTTTTATCTTTCATTTTTTTTTTTTTTATTTAAAAACCCT
TTTTTTTTTTTTCCCCCCCCCCCCCAAAAAAAAGAGATTCTTTTAAAAAA
AAAAAAAGAGGTTTTCTTTTTTTTTTTTCTTCTTTCTTTTTTTTCTCTTT
TTCTTTTTCTCTTCTTTTCTTTTTTTGTTCTGTTTTTCCTCTTTTTTTTT
TTCTTTTCTTTTTTTTTTTTTCTCTCTTTTTCTTCTTTCTCCTTCTTTTT
TTTTTCTCTTCTTCTTTTTTCTTCCTCTTTCTCTTGTTTTTCTTCTTCTC
TCTTTCTTCTTTTTTTTTTTTTTCTCTCTTCTCTTTTTTTTTTTCTTTTT
TTCTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCTCCTTTTTTTCTTTCTC
TTCTTTCTCTTTCCTTTTTTCTCTTTTCTTTTTTCTTTTTCTTTCTTTTT
TCTCTTTTTTCTTTCTTTTTTTCTCTTTCTTTTTCTCTTTTTTTTTTTTT
TTCTCTTTCTTTCTTTGTCCTTCTTTTCTTTTTTTCTTTCTGATATTTTG
TAATATTTTCTTTTTACTTAAACCTACTTATAATCATTTAAACTCATTCT
TTTCTTTCTTTTATTTATTTTTTCCTTATTTACTATATTTTTTTTCTATT
TATTCTATTATATTCTTTTTTTATTTCTTATATATATTTAATTTCTATTT
TTCTCTATTACTATTTTATACTTTTATTATTTCTCAACTTTCTCTATTAC
ATTATGTCTTTATTATTTTTATCTCTTTTTCTATTATATTTCTTTAGTAT
ATTTTTCTCTTGCTCTTTTTGTCTTTACTCTTATTTATTTTATTTCATTT
CACTTTTCTTTTCCTTTCTTATCTTTTTATTTTTTACTCATTCTTATCTT
TTTATATTATTTTCTTTATACTATTTTTCATTTATTTATATATCATATCT
TATATTATTTATTTCTTATATCTTTTTGTTCTTTTTAGTTTTGTTATTTC
TTATTTTTATTCAATTTTAATCTCTTCACTTTTTTTAATTATTATTTAAA
TCTTTTTATCTCTGCTTTTATAATATATTATTCATTTTCTATTTTTTAGA
TATTTTTTATTTAATAATATAATCTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_k11.b1 MSMg01no192_k11.b1 CHROMAT_FILE:
MSMg01no192_k11.b1 PHD_FILE: MSMg01no192_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:10:18 2005
         (425 letters)



>mm_chr5_14410439_14411263
          Length = 825

 Score =  650 bits (336), Expect = 0.0
 Identities = 360/368 (97%)
 Strand = Plus / Minus

                                                                       
Query: 58  tttaagtgcatattatttgtgcttgactgaatatgtgcatcatatgtaggtaagatccat 117
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 825 tttaagtgcatattatttgtgcttgactgaatatgtgcatcatatgtaggtaaggtccat 766

                                                                       
Query: 118 ggaggccagaataaggattctgaaatcctagaactgccggtatagatggttatgagctac 177
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| 
Sbjct: 765 ggaggccagaataaggattctgaaatcctagaactggaggtatagatggttatgagctat 706

                                                                       
Query: 178 ggtatgtgttttgaaaaccaaattcaggttctctgaaaaagtttcaagtacttttaatca 237
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 705 ggtatgtgttttgaaaaccaaattcaggttctttgaaaaagtttcaagtacttttaatca 646

                                                                       
Query: 238 ctgcatcatcttttcaaccctaaatatagtcacaaggaaatacatctcttcaagtgaaga 297
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 645 ctgcatcatcttttcaaccctaaaaatagtcacaaggaaatacatctcttcaagtgaaga 586

                                                                       
Query: 298 taattcctaacctagaaaaatactaacaagatggaagtaactattatctcccagaaacca 357
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 585 taattcctaacctagaaaaatactaacaagatgggagtaactattatctcccagaaacca 526

                                                                       
Query: 358 aaaatgtctttgagattatctggctagtgacagagagcaaagatccccaaattgaagtta 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 525 aaaatgtctttgagattatctggctagtgacagagagcaaagatccccaaattaaagtta 466

                   
Query: 418 ttatatgt 425
           ||||||||
Sbjct: 465 ttatatgt 458


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)