Query= MSMg01no193_g09.b1 MSMg01no193_g09.b1 CHROMAT_FILE:
MSMg01no193_g09.b1 PHD_FILE: MSMg01no193_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:48 2005
(421 letters)
>mm_chr5_52463415_52464235
Length = 821
Score = 739 bits (382), Expect = 0.0
Identities = 397/402 (98%)
Strand = Plus / Minus
Query: 17 gaattcttggtaacatcaccttgcttccttcctagcaggcagtttggtgcatgcatgctt 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gaattcttggtaacatcaccttgcttccttcctagcaggcagtttggtgcatgcatgctt 559
Query: 77 ttttggcttgacctggaaaataggaatattggtgtagcatttcccaaaggtgaagaacat 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttttggcttgacctggaaaataggaatattggtgtagcatttcccaaaggtgaagaacat 499
Query: 137 attaactaaggtttttgcagctttctgagcgtctgaggcttaaaaaggacaagacgttcc 196
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 498 attaactaaggtttttgcagctttctgaacgtctgaggcttaaaaaggacaagacgttcc 439
Query: 197 tcagggtctgtttgccatagtgcagtctgccttctgtgtatgctttcgaccacattgtct 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tcagggtctgtttgccatagtgcagtctgccttctgtgtatgctttcgaccacattgtct 379
Query: 257 gggtctttatcttttcaggatagctctattaccctaaggtacatatttttccaaacatta 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gggtctttatcttttcaggatagctctattaccctaaggtacatatttttccaaacatta 319
Query: 317 taagatgcctggtgtgataacactagagggagagaaatccatgcgtgtgatccttacgtg 376
|||||||||||||||||||||||||||||||||||||||||||||||||| || | |||
Sbjct: 318 taagatgcctggtgtgataacactagagggagagaaatccatgcgtgtgagccagatgtg 259
Query: 377 gtgtgttttgagcacttacggcaggatcgcattggctgtttg 418
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gtgtgttttgagcacttacggcaggatcgcattggctgtttg 217
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space: 334544
Effective search space used: 334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no193_g09.g1 MSMg01no193_g09.g1 CHROMAT_FILE:
MSMg01no193_g09.g1 PHD_FILE: MSMg01no193_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:48 2005
(372 letters)
>mm_chr5_52381674_52382445
Length = 772
Score = 553 bits (286), Expect = e-162
Identities = 339/372 (91%), Gaps = 30/372 (8%)
Strand = Plus / Plus
Query: 1 tcatggctccttttagatgtacggattgagaagtgccggattctatcattttaaatgggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 tcatggctccttttagatgtacggattgagaagtgccggattctatcattttaaatgggc 290
Query: 61 tttcttttcttttcttttcttttcttttcttttcttttcttttctcttcttttcttttct 120
||||||||||||||||||| || ||||||||||||||| |||||||||||||
Sbjct: 291 tttcttttcttttcttttc---tc--ttcttttcttttctt-----ttcttttcttttc- 339
Query: 121 tttcttttcttcttttctgttctctcctttcctttcctttcctttcctttcctttccttt 180
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 -ttctt---ttctgttctgttctctcctttcctttcctttcctttcctttcctttccttt 395
Query: 181 ccttttcttttctttcctttcctttcctttttttttcttttagaaagagattgcagctca 240
| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 396 c----------ctttcctttcctttcc-----ttttcttttagaaagagattgcagctca 440
Query: 241 ggtactctgctgaatacactcctggcagctcactgctgctagatcccaaacagatcattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtactctgctgaatacactcctggcagctcactgctgctagatcccaaacagatcattt 500
Query: 301 gggaaggaagaagcatgctgggccttatagaggagcaaaatgactcagtgtgcactgctg 360
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 501 gggaaggaagaagcatgctgggccttagagaggagcaaaatgactcagtgcgcactgctg 560
Query: 361 cctttggccagg 372
||||||||||||
Sbjct: 561 cctttggccagg 572
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space: 276969
Effective search space used: 276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
