Query= MSMg01no194_j20.b1 MSMg01no194_j20.b1 CHROMAT_FILE:
MSMg01no194_j20.b1 PHD_FILE: MSMg01no194_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:32 2005
(674 letters)
>mm_chr5_82664762_82665835
Length = 1074
Score = 1096 bits (567), Expect = 0.0
Identities = 573/575 (99%)
Strand = Plus / Minus
Query: 100 gatatcagttcatattatttttatgtagttaatcatgtaaaagtaattcacaggatagca 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1074 gatatcagttcatattatttttatgtagttaatcatgtaaaagtaattcacaggatagca 1015
Query: 160 atactctacaattctatccgaaagggaatcacctgcagaatgtgccagtttccacctgga 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1014 atactctacaattctatccgaaagggaatcacctgcagaatgtgccagtttccacctgga 955
Query: 220 atcagggttctcagcagaaagcagcaggagaattgtaatgagttctggaccacagtgtgg 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954 atcagggttctcagcagaaagcagcaggagaattgtaatgagttctggaccacagtgtgg 895
Query: 280 ggccttgtctcaaaataacagcaacaacaacaacaaaaaaatgccttgcaataaacctgc 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 ggccttgtctcaaaataacagcaacaacaacaacaaaaaaatgccttgcaataaacctgc 835
Query: 340 atagttagtcactggcctctgcttgctctctgaaaacaccctgaatttgtatagttatat 399
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 atagttagtcactggcctgtgcttgctctctgaaaacaccctgaatttgtatagttatat 775
Query: 400 attgctttttaaaatcctgttatcaggctcccaggctaatataaattcatctgggatctt 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 attgctttttaaaatcctgttatcaggctcccaggctaatataaattcatctgggatctt 715
Query: 460 tatatagagcagggaactttgcttcttcttcaatatatcagcttacttaataagtaaaag 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 tatatagagcagggaactttgcttcttcttcaatatatcagcttacttaataagtaaaag 655
Query: 520 gttactgtcacacaggaaagaagagatgactttacctccctgttattataggcattggaa 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 gttactgtcacacaggaaagaagagatgactttacctccctgttattataggcattggaa 595
Query: 580 gggtacagttcagaaataaatgtgtgctggggccttaaggaattaaataaccatagcccc 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gggtacagttcagaaataaatgtgtgctggggccttaaggaattaaataaccatagcccc 535
Query: 640 agatgtacaaaaaaagttacttaaggaaagaggtg 674
||||||||||||||||||||||| |||||||||||
Sbjct: 534 agatgtacaaaaaaagttacttagggaaagaggtg 500
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no194_j20.g1 MSMg01no194_j20.g1 CHROMAT_FILE:
MSMg01no194_j20.g1 PHD_FILE: MSMg01no194_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:32 2005
(290 letters)
>mm_chr5_82505744_82506433
Length = 690
Score = 484 bits (250), Expect = e-141
Identities = 281/292 (96%), Gaps = 4/292 (1%)
Strand = Plus / Plus
Query: 1 attgtctggttctccagctatggcttcgaagaaacaagtacttgtagtaaga--atgtgt 58
|||| ||||||||| ||||||||||||||||||||||||||||||||||||| || | |
Sbjct: 201 attgcctggttctctagctatggcttcgaagaaacaagtacttgtagtaagaacat-t-t 258
Query: 59 ctacacggatggcatgatttagtgggaaagagaattaagaaccagccacagaggtgacct 118
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 259 ctacacggagggcatgatttagtgggaaagggaattaagaaccagccacagaggtgacct 318
Query: 119 tgtcaggcatcaatgggaggagaggcttttggtcctgggagttggggggcaagaacaggc 178
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 319 tttcaggcatcaatgggaggagaggcttttggtcctgggggttggggggcaagaacaggc 378
Query: 179 cacagtgaacccagaggacagtatttcactaaagtcaggctagtcatgacttggactttt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cacagtgaacccagaggacagtatttcactaaagtcaggctagtcatgacttggactttt 438
Query: 239 gagtgaaactgtagggttattatttgaaaatgctgggaaacattcaacttct 290
||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 439 gagtgaaactgtaggattattatttgaaaatgctgggaaacattcaacttct 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
