CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTGTTTTTACCAGCTGAGTAGTATTCCATTGTGTAAATGTACAT
TTTCTGTATCCATCGCTCTGTTGAGAGACACTTCGGTCCTTCTTAGAAGG
GGGGAACAAAATAACCATAGAAGGAGATCCAGAGACAAAGTGTGGAACAG
AGACTGAAGGTAAGATCATCCAGAGACTGCCCCACCTGGGGATCCATCCC
ACATACAGTCACCAAACAGAAATACTATGGTGGATGCCAACAAGTGCTTG
CTGACAGGAGCCTGATATGGCTATCTCCTGAGAGGCTCTGCCAGTGCCTG
AAAAATACAGAGGTGTATGCTCTCAGCCAACCATTCGACTGAGCACAAGG
TCTCTAATGGAGGAGCTACAGAAAGGACCTAAGAAGTTGAAGGAACTTGC
AGCCCCATAGGATAATAATATGAACCAACCAGTACCCCCAGAGCTCCCAG
AGATTAAACCACCAACCAAAGAGTACACATGGAGGGATCCATGGCTCCAG
CTGCATATGTAGCAGAGGATGGCCTTGTTGGACATCAGTGGGAGGATTGT
TCCTTGGGCCTGAGACAGCTCGATGCCCCCAGTGTAGGTAAATGCCAGGA
CAGGGGAGCTAAAGTAGGTGGGTTGGTGAGCAGGGGAAGAGGGGATGTTA
CACGCCTGCTCTTTTTCTTTTTTTTTTTTTTCCCCTTTTTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAAATTGTATTTAGCTGTAAAGA
TCTCTACTAGACGAGGCTTATTTCAAGATATTTAGACAAAAATTTAGGAT
GTCTCATATTACAAACTTTACTGCAGTTGAAATTTTCTTTTCTTTCTTTC
TTTTCTGTACTTTCCTTTTTTAATTTTATAATTTATTTTTTTATTGTGAG
TTGAGCAAATATGTTTCATTATTTTTCTATCTCCTCCAAGTGCTCACAAT
ACTTTCCACAGAACATTCAGTGAATATGTACTGGTCCATTTAGTCTTCTT
ATTCTGCACGTTTCCGATTTAAATGTTATGATTATGAAAATGTTCCAAAT
TGATATGACTCTATCCAACTGAGAAACCACTATTAAAACTCAATAACAGT
AGTACTGGCAAAATGACTTATTGGATATAGGCACATGTTGCCAAGCCTAG
GTTCCTGTGATTAATAACCTTAAAGCTCATGGAAGAAGGAAAGAACCCAC
TTCTCCAAGTTGTCTTCTGACCTCCACAAGTGCACTGTTGCTCATGTCCT
CTCTAGCAATGCAAAATTAAGCAATAAATTTAAATTGAGAAATAAGAAAT
AATTAAAGAAAAACTTTATCACATCATTCATGAATGCCATGTACAATGGA
AGACAAGTGGGTACAACTGATAATACTATTTTCAAGAGCTCAGTTT

Query= MSMg01no194_k20.g1 MSMg01no194_k20.g1 CHROMAT_FILE:
MSMg01no194_k20.g1 PHD_FILE: MSMg01no194_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:37 2005
         (662 letters)



>mm_chr5_71620921_71621982
          Length = 1062

 Score = 1149 bits (594), Expect = 0.0
 Identities = 646/664 (97%), Gaps = 2/664 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaaattgtatttagctgtaaagatctctactagacgaggcttatttcaagatatttaga 60
           ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 760 ttaaattgtatttggctgtaaagatctctaatagacgaggcttatttcaagatatttaga 701

                                                                       
Query: 61  caaaaatttaggatgtctcatattacaaactttactgcagttgaaattttcttttctttc 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 700 caaaaatttaggatgtctcatattacaaactttactgaagttgaaattttcttttctttc 641

                                                                       
Query: 121 tttcttttctgtactttcc--ttttttaattttataatttatttttttattgtgagttga 178
           |||||||||||||||||||  ||||||||||||||||||||||||||||||| |||   |
Sbjct: 640 tttcttttctgtactttccttttttttaattttataatttatttttttattgcgagacaa 581

                                                                       
Query: 179 gcaaatatgtttcattatttttctatctcctccaagtgctcacaatactttccacagaac 238
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 gtaaatatgtttcattatttttctatctcctccaagtgctcacaatactttccacagaac 521

                                                                       
Query: 239 attcagtgaatatgtactggtccatttagtcttcttattctgcacgtttccgatttaaat 298
           |||||||| | |||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 520 attcagtggacatgtactggtccttttagtcttcttattctgcacatttccgatttaaat 461

                                                                       
Query: 299 gttatgattatgaaaatgttccaaattgatatgactctatccaactgagaaaccactatt 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gttatgattatgaaaatgttccaaattgatatgactctatccaactgagaaaccactatt 401

                                                                       
Query: 359 aaaactcaataacagtagtactggcaaaatgacttattggatataggcacatgttgccaa 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 aaaactcaataacagtagtactggcaaaatgacttattggatataggcacatgttgccaa 341

                                                                       
Query: 419 gcctaggttcctgtgattaataaccttaaagctcatggaagaaggaaagaacccacttct 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gcctaggttcctgtgattaataaccttaaagctcatggaagaaggaaagaacccacttct 281

                                                                       
Query: 479 ccaagttgtcttctgacctccacaagtgcactgttgctcatgtcctctctagcaatgcaa 538
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 280 ccaagttgtcttctgacctccacaagtgaactgttgctcatgtcctctctagcaacgcaa 221

                                                                       
Query: 539 aattaagcaataaatttaaattgagaaataagaaataattaaagaaaaactttatcacat 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 aattaagcaataaatttaaattgagaaataagaaataattaaagaaaaactttatcacat 161

                                                                       
Query: 599 cattcatgaatgccatgtacaatggaagacaagtgggtacaactgataatactattttca 658
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 cattcatgaaccccatgtacaatggaagacaagtgggtacaactgataatactattttca 101

               
Query: 659 agag 662
           ||||
Sbjct: 100 agag 97


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)