CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTCTGTACACCAGGTTGGCACAAACTCACATTGTAGCTTAGAATG
GTCTTAAACTTCCCTCTCTTGACTTTTATTTTATTTATTTGGTTTTTCGA
GACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGCAGA
CCAGGCTAGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGC
TGGGATTAAAGGCGTGTGCCACCACGCCCGGCCCCTCTCTTGGCTTTCAC
ATCCCACAGCCTGATTACAGGTGTGCCACTGCAGATGTGTACCACCCTGC
CTAGAAGTCCTTTTGCTTCTAAGAGGCCTGTCCCCAGGCATGTGAGCTAT
TTCCTAGCTTCCAGCTGCTGCAGGACGCCACTCCTGTACCAAGTGGCTAC
ACTGCCACTGTCCATGGCTCTGTGAGGGGCACTCATATTAAGATTAGACA
CTCAAGGGGCTGTGGTTATCGGAGATTCTGTTGATCTGCATGTCCCTGGT
TGTGCCGCCTTGTCCCTGCCTGGTCCTCATTGGATTCTGACAGTGGCTTG
AGGCTCTGCTGGAGCCGCCAGCTGGGCCTTCTCCCTAGGACACTGGCTTC
ATTCAGCAAATCCTCAGAGCTTCAGCAGGGTCCATGGGAGCCC

CAATAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAAA
GAAGACCGAGAAATCTGGGCTTTATGTTAATAAGTATGCTCTTAAAATGA
GCTGTGNCCAAACCTTCTGTCTCTTGTGTAGTGTGTGTGTGTGTGTGTGT
GTGTGTGTAGAGTGGGTGNNNNNNNNNTNTTNTTTTNNTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTNNNNNNTTTTTTTTTTTNNNNNNNNNNNNAAAA
NNNTTTTTTTTTCCTCCNNCCCCACCCCAAAAAAATATNNANNNNNNNNN
NNNNNNAAAAAAAAAAAAAAAATTTGGGGGGGGGGGTTTTTTATTTTTTT
TCTTTTTTTGTAAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAA
ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAATAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAC
AAAAAAAAAAAAAAAT

Query= MSMg01no194_n09.b1 MSMg01no194_n09.b1 CHROMAT_FILE:
MSMg01no194_n09.b1 PHD_FILE: MSMg01no194_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:50 2005
         (642 letters)



>mm_chr5_140934190_140935238
          Length = 1049

 Score = 1139 bits (589), Expect = 0.0
 Identities = 629/647 (97%), Gaps = 11/647 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactctgtacaccaggttggcacaaactcacattgtagcttagaatggtcttaaa 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactctgtagaccaggttggcacaaactcacattgtagcttagaatggtcttaaa 264

                                                                       
Query: 65  cttccctctcttgacttttattttatttatttggtttttcgagacagggtttctctgtgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttccctctcttgacttttattttatttatttggtttttcgagacagggtttctctgtgt 324

                                                                       
Query: 125 agccctggctgtcctggaactcactttgcagaccaggctagcctcaaactcagaaatctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agccctggctgtcctggaactcactttgcagaccaggctagcctcaaactcagaaatctg 384

                                                                       
Query: 185 cctgcctctgcctcccaagtgctgggattaaaggcgtgtgccaccacgcccggcccctct 244
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 385 cctgcctctgcctcccaagtgctgggattaaaggtgtgtgccaccacgcccggcccctct 444

                                                                       
Query: 245 cttggctttcacatcccacagcctgattacaggtgtgccactgcagatgtgtaccaccc- 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| 
Sbjct: 445 cttggctttcacatcccacagcctgattacaggtgtgccactgcagatgtgcaccaccca 504

                                                                       
Query: 304 ---tgcctagaagtccttttgcttctaagaggcctgtccccaggcatgtgag--ctattt 358
              ||||||||||||||||||||||||||||||||||||||||  ||||| |  |||| |
Sbjct: 505 ccctgcctagaagtccttttgcttctaagaggcctgtccccag--atgtgtgaactatct 562

                                                                       
Query: 359 cctagcttccagctgctgcaggacgccactcctgtaccaagtggctacactgccactgtc 418
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 563 cctagcttccagctgctgcaggacaccactcctgtaccaagtggctacactgccactgtc 622

                                                                       
Query: 419 catggctctgtgaggggcactcatattaagattagacactcaaggggctgtggttatcgg 478
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 623 catggctctgtgaggggcactcatattaagattagacactcgaggggctgtggttatcgg 682

                                                                       
Query: 479 agattctgttgatctgcatgtccctggttgtgccgccttgtccctgcctggtcctcattg 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 agattctgttgatctgcatgtccctggttgtgccgccttgtccctgcctggtcctcattg 742

                                                                       
Query: 539 gattctgacagtggcttgaggctctgctggagccgccagctgggccttctccctaggaca 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gattctgacagtggcttgaggctctgctggagccgccagctgggccttctccctaggaca 802

                                                          
Query: 599 ctggcttcattcagca---aatcctcagagcttcagcagggtccatg 642
           ||||||||||||||||   ||||||||||||||||||||||||||||
Sbjct: 803 ctggcttcattcagcatgcaatcctcagagcttcagcagggtccatg 849


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1049
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1039
Effective search space:   656648
Effective search space used:   656648
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)