MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-195C19
Chromosome	5 (Build37)
Map Location	112,468,696 - 112,469,019
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Ttc28, Pitpnb, Mn1
Downstream gene	A230057G18Rik, Cryba4, Crybb1, Tpst2, Tfip11, 2810002G02Rik, Hps4, EG625424, Asphd2, Sez6l, EG625464, Myo18b, Adrbk2
Link	Open Mouse BAC browser

Click to get alignment info.

name	Ttc28 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:209683 MGI:2140873
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 192 ESTs, 1 Protein

name	Pitpnb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56305 MGI:1927542
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433938 MGI:1261813
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	A230057G18Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:330166 MGI:2444886
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 ESTs

name	Cryba4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12959 MGI:102716
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Crybb1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12960 MGI:104992
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tpst2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22022 MGI:1309516
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tfip11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54723 MGI:1930075
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2810002G02Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70118 MGI:1917368
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hps4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:192232 MGI:2177742
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG625424 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:625424 MGI:3648511
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Asphd2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72898 MGI:1920148
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sez6l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56747 MGI:1935121
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG625464 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:625464 MGI:3648937
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs, 2 Proteins

name	Myo18b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74376 MGI:1921626
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 5 Proteins

name	Adrbk2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320129 MGI:87941
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Ttc28 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149254130 GeneID:209683 MGI:2140873
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 192 ESTs, 1 Protein product : tetratricopeptide repeat domain 28 transcript_id : XM_001481308.1

name	Pitpnb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802542 GeneID:56305 MGI:1927542
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphatidylinositol transfer protein, beta transcript_id : NM_019640.3

name	Mn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486984 GeneID:433938 MGI:1261813
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : meningioma 1 transcript_id : NM_001081235.1

name	A230057G18Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94375118 GeneID:330166 MGI:2444886
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 ESTs product : RIKEN cDNA A230057G18 gene transcript_id : XM_489103.3

name	Cryba4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:10946671 GeneID:12959 MGI:102716
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : crystallin, beta A4 transcript_id : NM_021351.1

name	Crybb1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130494 GeneID:12960 MGI:104992
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : crystallin, beta B1 transcript_id : NM_023695.2

name	Tpst2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981951 GeneID:22022 MGI:1309516
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein-tyrosine sulfotransferase 2 transcript_id : NM_009419.2

name	Tfip11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130732 GeneID:54723 MGI:1930075
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tuftelin interacting protein 11 transcript_id : NM_018783.4

name	2810002G02Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124249055 GeneID:70118 MGI:1917368
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2810002G02 gene transcript_id : NM_027323.1

name	Hps4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:42476086 GeneID:192232 MGI:2177742
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Hermansky-Pudlak syndrome 4 homolog (human) transcript_id : NM_138646.2

name	EG625424 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802475 GeneID:625424 MGI:3648511
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG625424 transcript_id : NM_001039228.2

name	Asphd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:55926228 GeneID:72898 MGI:1920148
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : aspartate beta-hydroxylase domain containing 2 transcript_id : NM_028386.1

name	Sez6l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124249081 GeneID:56747 MGI:1935121
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : seizure related 6 homolog like transcript_id : NM_019982.2

name	EG625464 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94375085 GeneID:625464 MGI:3648937
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs, 2 Proteins product : predicted gene, EG625464 transcript_id : XM_894605.2

name	Myo18b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149254132 GeneID:74376 MGI:1921626
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 5 Proteins product : myosin XVIIIb transcript_id : XM_990203.2

name	Adrbk2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:78711829 GeneID:320129 MGI:87941
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : adrenergic receptor kinase, beta 2 transcript_id : NM_177078.3

name	Adrbk2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:78711827 GeneID:320129 MGI:87941
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : adrenergic receptor kinase, beta 2 transcript_id : NM_001035531.1

name	Ttc28 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149254131 GeneID:209683 MGI:2140873
definition	codon_start : 1 exception : unclassified translation discrepancy note : overriding stop codons product : similar to OTTHUMP00000028696 protein_id : XP_001481358.1 transl_except : (pos:111706166..111706168,aa:OTHER) transl_except : (pos:111706175..111706177,aa:OTHER) transl_except : (pos:111706232..111706234,aa:OTHER) transl_except : (pos:111707515..111707517,aa:OTHER) transl_except : (pos:111709188..111709190,aa:OTHER) transl_except : (pos:111710905..111710907,aa:OTHER) transl_except : (pos:111711823..111711825,aa:OTHER) transl_except : (pos:111711901..111711903,aa:OTHER) transl_except : (pos:111712969..111712971,aa:OTHER) transl_except : (pos:111712978..111712980,aa:OTHER) transl_except : (pos:111713014..111713016,aa:OTHER) transl_except : (pos:111713023..111713025,aa:OTHER) transl_except : (pos:111714019..111714021,aa:OTHER) transl_except : (pos:111714265..111714267,aa:OTHER) transl_except : (pos:111714268..111714270,aa:OTHER) transl_except : (pos:111714493..111714495,aa:OTHER) transl_except : (pos:111714598..111714600,aa:OTHER) transl_except : (pos:111714775..111714777,aa:OTHER) transl_except : (pos:111715003..111715005,aa:OTHER) transl_except : (pos:111715171..111715173,aa:OTHER) transl_except : (pos:111715183..111715185,aa:OTHER) transl_except : (pos:111715393..111715395,aa:OTHER)

name	Pitpnb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9790159 GeneID:56305 MGI:1927542
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0008289 - lipid binding [Evidence IEA]; GO:0005543 - phospholipid binding [Evidence ISS] GO_process : GO:0001701 - embryonic development (sensu Mammalia) [Evidence IMP]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : phosphatidylinositol transfer protein beta isoform; Pitp beta; phosphotidylinositol transfer protein, beta product : phosphatidylinositol transfer protein, beta protein_id : NP_062614.1

name	Mn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486985 GeneID:433938 MGI:1261813
definition	GO_process : GO:0001957 - intramembranous ossification [Evidence IMP] codon_start : 1 product : meningioma 1 protein_id : NP_001074704.1

name	A230057G18Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82899261 GeneID:330166 MGI:2444886
definition	codon_start : 1 product : hypothetical protein protein_id : XP_489103.2

name	Cryba4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946672 CCDS:CCDS19536.1 GeneID:12959 MGI:102716
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA] GO_function : GO:0005212 - structural constituent of eye lens [Evidence IEA] GO_process : GO:0007423 - sensory organ development [Evidence IEA] codon_start : 1 function : lens structural protein product : crystallin, beta A4 protein_id : NP_067326.1

name	Crybb1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:12963789 CCDS:CCDS19537.1 GeneID:12960 MGI:104992
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA] GO_function : GO:0005212 - structural constituent of eye lens [Evidence IEA] GO_process : GO:0007423 - sensory organ development [Evidence IEA] codon_start : 1 product : crystallin, beta B1 protein_id : NP_076184.1

name	Tpst2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678421 CCDS:CCDS19538.1 GeneID:22022 MGI:1309516
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008476 - protein-tyrosine sulfotransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 product : protein-tyrosine sulfotransferase 2 protein_id : NP_033445.1

name	Tfip11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10190660 CCDS:CCDS19539.1 GeneID:54723 MGI:1930075
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IDA]; GO:0005622 - intracellular [Evidence IEA] [Evidence NAS]; GO:0005634 - nucleus [Evidence ISS] [Evidence IEA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0030154 - cell differentiation [Evidence NAS]; GO:0030198 - extracellular matrix organization and biogenesis [Evidence NAS]; GO:0001503 - ossification [Evidence IEA]; GO:0045045 - secretory pathway [Evidence NAS] codon_start : 1 note : tuftelin-interacting protein 33; tuftelin-interacting protein, 39 kD product : tuftelin interacting protein 11 protein_id : NP_061253.2

name	2810002G02Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124249056 GeneID:70118 MGI:1917368
definition	GO_process : GO:0048511 - rhythmic process [Evidence IEA] codon_start : 1 note : SRR1-like product : sensitivity to red light reduced-like protein_id : NP_081599.1

name	Hps4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:42476087 CCDS:CCDS19540.1 GeneID:192232 MGI:2177742
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0016023 - cytoplasmic membrane-bound vesicle [Evidence IDA]; GO:0005764 - lysosome [Evidence ISS]; GO:0042470 - melanosome [Evidence ISS]; GO:0005624 - membrane fraction [Evidence ISS] GO_function : GO:0042803 - protein homodimerization activity [Evidence ISS] GO_process : GO:0007599 - hemostasis [Evidence ISS]; GO:0007040 - lysosome organization and biogenesis [Evidence ISS]; GO:0030318 - melanocyte differentiation [Evidence IMP]; GO:0006996 - organelle organization and biogenesis [Evidence IMP]; GO:0048081 - positive regulation of cuticle pigmentation [Evidence ISS]; GO:0048075 - positive regulation of eye pigmentation [Evidence ISS]; GO:0050821 - protein stabilization [Evidence ISS]; GO:0006605 - protein targeting [Evidence ISS] codon_start : 1 exception : mismatches in translation note : light ear product : Hermansky-Pudlak syndrome 4 homolog protein_id : NP_619587.2

name	EG625424 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85986623 GeneID:625424 MGI:3648511
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC625424 protein_id : NP_001034317.1

name	Asphd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:55926229 CCDS:CCDS19542.1 GeneID:72898 MGI:1920148
definition	GO_component : GO:0030176 - integral to endoplasmic reticulum membrane [Evidence IEA] GO_function : GO:0004597 - peptide-aspartate beta-dioxygenase activity [Evidence IEA] GO_process : GO:0018193 - peptidyl-amino acid modification [Evidence IEA] codon_start : 1 product : aspartate beta-hydroxylase domain containing 2 protein_id : NP_082662.1

name	Sez6l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124249082 GeneID:56747 MGI:1935121
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : acupuncture induced gene 1 product : seizure related 6 homolog like protein_id : NP_064366.2

name	EG625464 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94375086 GeneID:625464 MGI:3648937
definition	codon_start : 1 product : hypothetical protein protein_id : XP_899698.2

name	Myo18b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149254133 GeneID:74376 MGI:1921626
definition	codon_start : 1 product : myosin XVIIIb protein_id : XP_995297.2

name	Adrbk2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:78711830 CCDS:CCDS19545.1 GeneID:320129 MGI:87941
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0047696 - beta-adrenergic receptor kinase activity [Evidence IEA]; GO:0004703 - G-protein coupled receptor kinase activity [Evidence IDA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; beta ARK2 product : adrenergic receptor kinase, beta 2 isoform 1 protein_id : NP_796052.2

name	Adrbk2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:78711828 GeneID:320129 MGI:87941
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0047696 - beta-adrenergic receptor kinase activity [Evidence IEA]; GO:0004703 - G-protein coupled receptor kinase activity [Evidence IDA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; beta ARK2 product : adrenergic receptor kinase, beta 2 isoform 2 protein_id : NP_001030608.1

clone name	MSMg01-537N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-272H03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452N07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-306I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-217G07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-423K16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170C04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-148G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-512D10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-358O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-150G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-054M06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-313N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-067F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-146C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487O20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-180D13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-380M24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375L23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134I17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501A09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-136G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-330I06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-195C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-307F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-291H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-522F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-300D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-142J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-373C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-322D09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-323A14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524L19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-341E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459O24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-305N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-060K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-291H16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-405F11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-272I19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-274B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-181M23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-128O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-163L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-474M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-196M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-512D09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-067M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-115P24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-115H24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394H10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-464F05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-397L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-459B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-113P18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054E21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-091N22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322O23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-167K06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-336D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-348M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210C13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-238P05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-087P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-187P11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-232F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307N11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101E24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-267O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049D09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-248K24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-169D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049J23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-236K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350O01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-333E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187F16
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-195C19.T7 (MSMg01no195_c19.b1)	MSMg01-195C19.TJ (MSMg01no195_c19.g1)
ACC	AG383800	AG383801
length	728	737
length of high quality (start - end)	325 (46 - 370)	286 (76 - 361)
definition	CHROMAT_FILE: MSMg01no195_c19.b1 PHD_FILE: MSMg01no195_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:18 2005	CHROMAT_FILE: MSMg01no195_c19.g1 PHD_FILE: MSMg01no195_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:18 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG AATTCCCATGCATGTCTCCCTTCATCCATCTTTCCCTCAAGGAGCACCTA CTGTGAGCACAGCCCCACACTAGGTGCCCAGGCTAGATGGCCCCACCCCA GGACAGGGCTGGTGAGCCACAGCAGTTGGGCCTGGCCTGCAGCTGCTGTG TCCCAGGGCTCTCCACAGGGTGCCAAAACGGCACCTGCCAGCTCACAGGC TGACAGAAAAATCTCTGGAGGGAAAAAAAAAAAAGGATTACATTCACTCT CTTAACCTCCCCCACCCAGGACATAAATTGTCTCTGTTTATAACGCTTCT GGCATTTCGTACATTTTGCCAAGCGCCCTCACAATGACAATAGATTTAGG ACCCACCAGCAGAAAAGTACCTAAAACGCCACATGTCACTGATCCTGACA GTTCTAAAAGTAAAAGTTGGAAATGGTTCAGGGGACATAAATTAAAATAA AAATATAGACTTTGTCCTTGAGAGAGAATCAGCTAAAATTAAACCTGAGC GTGGGTGGTATGTCCAGGAATAGGTGGAAGAGAAACGTCGGGGATGTCTC ATTCAGAAAGACTCACAGACAGGGGACAGAAGGAGTAGAAGATGGAAGGA GCTCTGGNCAGTCCCTCCACAGAGAAACAGCACCCCATTCAGTATGGCTA TGTTACCACTGGCCTGTGATCGTTCAGA	TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXTGGGGACTCTTGAGTGGGTACAAAA ATGCTAGAGCCCTGAGAGGGGCTGTGATGGGGGATGTTGCTGCCACTCCT CCTCTTCCTCCTCCTTCTGCTCCTCCCCCATTCCTGCTCCTTCCGCTCCC CTTGCTCCTTCTGCTCCTCCTCCTGCTTCTCTTGCTCTCCCTGCTCCCCC TCTTGCTCCTTCTGCTCCTCCTGCTCCTCTTCTTGCTGCTCCCCCTGCTC CTTCTCCTCCTGCTAGTTGCTGGTATCCTGAAGACGAAGATCAAACTTGC CCCAAGGATGCCTCTTTTTTCTCCCCCCCCCCCCTTAACTTGATATGGAC ACCTCCTTTCTCCTCCAACCTTCTTCCTCTCTTACCTAGTGTTGGGGGAT TGGAAGGGATAAGGGTGCAGCAAGCCGTTTGATATAGGAAACGCATAATG GCATACCTTGTCCCTCAGTGTATCCCACCGGTGAGTTCTAGTATCTATTA ATGCGCTGTTTGTCTCCTCCCCATCCACTATACTCACTTAAATACCCCTT TATCATCCGTTCTTCACCTTTACCTCTTGTTCTTTCCTTTCTTCTTTTTT TTCCTTTTTTTATCTTTACATTATATCTCTACACTTTTTTTTTCTTATCT GTTTAAACTCTTGATCTCTTTAATTCCTCAATGCCAC
quality values	Open. Hide. 6 6 6 6 6 15 17 39 41 41 39 39 39 37 39 37 37 30 30 33 37 33 33 43 43 26 24 24 24 24 35 43 53 50 57 57 57 57 57 57 42 42 28 30 30 42 43 57 57 42 42 47 47 68 68 50 50 50 50 50 68 68 68 68 68 68 68 68 68 68 51 51 50 50 51 51 51 51 51 51 68 68 68 68 68 68 68 68 68 50 50 50 50 50 51 68 68 68 68 68 68 68 68 68 68 68 68 50 57 57 68 68 68 68 68 68 68 68 68 59 59 59 57 59 59 59 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 48 48 43 43 43 59 57 59 59 59 59 59 59 59 59 68 68 68 68 68 68 68 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 37 37 39 41 41 28 15 15 12 15 11 12 11 11 10 8 8 8 8 8 8 8 9 12 15 22 29 41 59 47 48 48 48 59 59 59 59 57 57 57 57 57 57 59 59 59 48 48 48 57 57 59 59 48 48 48 48 54 54 68 68 68 57 59 59 59 59 47 46 43 43 39 39 37 37 39 47 57 57 59 68 68 68 59 57 57 48 47 47 43 43 43 59 59 59 57 59 59 68 68 68 59 59 57 57 57 57 57 59 57 57 59 57 57 57 57 57 57 57 54 54 54 57 57 54 54 54 57 57 59 59 59 57 57 57 57 57 57 59 57 57 57 57 57 57 57 57 57 57 57 57 57 48 48 48 57 57 46 46 43 48 48 59 57 54 54 48 46 46 36 43 47 59 59 57 57 57 57 57 57 48 48 48 48 43 43 43 43 46 47 47 46 57 57 59 59 59 48 46 46 46 41 43 43 41 32 29 29 29 32 32 29 32 39 43 47 41 46 41 47 43 41 32 32 35 30 30 37 34 33 33 28 28 33 33 43 48 59 47 47 41 39 39 39 38 34 36 31 41 41 47 47 35 35 35 39 37 59 37 37 35 31 23 27 28 30 28 32 31 28 28 25 33 29 30 22 17 15 21 16 14 21 17 26 34 35 31 34 39 37 39 32 37 23 17 3 0 3 17 17 22 24 28 32 37 29 27 31 28 23 28 23 25 20 25 25 32 37 37 37 30 25 25 32 36 32 25 23 19 17 12 12 11 17 17 22 32 28 34 32 30 25 30 34 33 30 30 33 13 7 6 6 6 13 13 16 16 21 21 23 30 30 23 20 11 11 11	Open. Hide. 6 6 7 7 8 8 6 6 8 13 15 19 10 10 10 19 31 41 42 46 48 48 48 47 47 47 39 47 47 48 48 48 48 48 42 42 42 37 28 29 29 42 42 43 43 43 43 46 42 50 50 50 48 50 48 48 48 54 54 57 30 40 36 36 41 41 44 57 48 41 41 48 41 50 41 57 46 57 41 39 39 46 46 47 57 57 57 44 43 42 42 42 42 37 42 50 50 50 50 57 47 47 47 50 50 43 43 43 59 59 57 57 44 44 35 42 42 59 59 52 52 52 57 52 41 41 46 50 50 50 59 32 32 32 38 38 57 57 57 57 57 57 57 57 57 57 57 59 57 68 68 68 68 68 59 59 59 59 59 59 59 59 59 59 59 59 52 52 52 57 57 59 59 59 59 59 59 57 57 57 57 59 59 52 52 45 62 62 62 62 59 59 57 57 57 57 57 59 59 59 59 43 57 39 57 57 59 59 59 59 52 52 52 59 59 59 59 59 59 59 59 59 57 57 52 59 59 59 59 59 59 57 57 43 57 57 59 59 59 59 52 52 43 57 57 59 59 57 57 57 57 57 52 52 52 57 57 59 59 59 59 52 52 52 59 59 59 59 59 59 46 46 43 57 57 59 50 54 54 59 59 59 47 47 47 47 47 48 57 59 68 68 57 57 44 44 43 57 59 59 59 59 59 57 57 57 59 59 59 46 46 40 44 44 48 48 48 43 47 48 47 37 40 30 30 37 40 47 48 34 32 20 20 20 28 28 28 20 20 20 34 34 48 48 47 47 43 48 48 57 44 48 48 48 37 37 34 26 33 19 10 10 8 9 8 8 10 11 13 11 11 11 11 11 13 13 15 15 19 25 25 25 22 19 12 12 12 18 24 32 47 47 48 48 43 43 43 43 48 59 57 57 57 57 48 48 48 59 57 59 59 57 59 47 47 47 57 53 47 59 57 48 43 37 32 24 20 15 14 12 12 12 12 11 12 12 12 9 16 16 34 34 47 47 59 59 37 37 37 28 28 28 37 37 39 39 24 24 20 32 32 28 30 30 21 19 13 13 11 11 14 18 24 12 12 12 12 12 11 9 9 9 9 9 9 10 14 13 12 12 12 11 11 11 12 8 10 8 8 8 8 8 7 6 8 8 16 17 23 11 11 11 10 10 10 8 8 8 8 8 6 6 7 10 8 8 9 10 8 8 8 8 8 8 15 15 22 18 19 11 8 8 6 6 6 6 8 8 8 8 14 8 8 8 8 8 11 13 13 12 10 9 8 8 6 7 10 11 9 7 8 7 7 8 8 6 6 8 8 9 11 11 10 10 8 8 8 8 8 8 8 8 6 6 8 8 13 10 12 10 8 8 8 8 8 8 8 6 8 8 8 10 11 22 13 18 11 12 14 10 8 8 10 8 8 8 8 8 6 6 8 8 10 11 9 9 8 8 8 9 13 13 8 8 8 10 19 19 19 15 24 9 9 9 12 12 11 12 12 11 8 8 8 8 8 8 8 8 8 8 8 8 9 9 9 10 12 15 10 8 8 8 8 8 8 8 8 10 13 13 8 8 8 8 11 9 9 9 10 10 10 8 11 8 6 8 11 13 13 10 11 11 10 10 10 10 9 15 11 11 11 11 11 10 8 8 6 6 8 8 8 8 9 9 11 11 11

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no195_c19.b1 MSMg01no195_c19.b1 CHROMAT_FILE:
MSMg01no195_c19.b1 PHD_FILE: MSMg01no195_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:18 2005
         (325 letters)



>mm_chr5_112468492_112469219
          Length = 728

 Score =  588 bits (304), Expect = e-172
 Identities = 318/324 (98%), Gaps = 3/324 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccatgcatgtctcccttcatccatctttccctcaaggagcacctactgtgagca 64
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 205 gaattcccatgcatgtctcccttcatccatctttccctcaaggaggacctactgtgagca 264

                                                                       
Query: 65  cagccccacactaggtgcccaggctagatggccccaccccaggacagggctggtgagcca 124
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 265 cagccccacactaggtgcccaggctagatggcccctccccaggacagggctggtgagcca 324

                                                                       
Query: 125 cagcagttgggcctggcctgcagctgctgtgtcccagggctctccacagggtgccaaaac 184
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 325 cagcagttgggcctggcctgcagctgctgtgtcccagggctcttcacagggtgccaaaac 384

                                                                       
Query: 185 ggcacctgccagctcacaggctgacagaaaaatctctggaggga---aaaaaaaaaaagg 241
           ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||
Sbjct: 385 ggcacctgccagctcacaggctgacagaaaaatctctggagggagaaaaaaaaaaaaagg 444

                                                                       
Query: 242 attacattcactctcttaacctcccccacccaggacataaattgtctctgtttataacgc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attacattcactctcttaacctcccccacccaggacataaattgtctctgtttataacgc 504

                                   
Query: 302 ttctggcatttcgtacattttgcc 325
           ||||||||||||||||||||||||
Sbjct: 505 ttctggcatttcgtacattttgcc 528


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 728
Length adjustment: 9
Effective length of query: 316
Effective length of database: 719
Effective search space:   227204
Effective search space used:   227204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information