Query= MSMg01no195_l18.b1 MSMg01no195_l18.b1 CHROMAT_FILE:
MSMg01no195_l18.b1 PHD_FILE: MSMg01no195_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:02 2005
(493 letters)
>mm_chr5_71850168_71851059
Length = 892
Score = 845 bits (437), Expect = 0.0
Identities = 469/485 (96%), Gaps = 10/485 (2%)
Strand = Plus / Plus
Query: 9 aatttataaagtacaaccagttgtttttacaataagaatgaacttccaagaaaaactatt 68
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 aatttataaagtacaatcagttgtttttacaataagaatgaacttccaagaaaaactatt 268
Query: 69 caaatataccaagttttataatagtaacaaaaaattaaaaaaacacttaggaatacgctc 128
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 269 caaatataccaagttttataatagtaacaaaaaatttaaaaaacacttagaaatacgctc 328
Query: 129 aaacaaataaatgaaagacctgtgtaatatagtctacaaagcatcaatgaatattagtta 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aaacaaataaatgaaagacctgtgtaatatagtctacaaagcatcaatgaatattagtta 388
Query: 189 taagaacatacatatatagtagcatctgagcttatggagaatcagttaagataaatgctg 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 taagaacatacatatatagtagcatctgagcttatggagaatcagttaagataaatgctg 448
Query: 249 tctactttgaagtaacaaatatggccaatgccaagactcaaagcgcatgttttatagcaa 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tctactttgaagtaacaaatatggccaatgccaagactcaaagcgcatgttttatagcaa 508
Query: 309 cagaaattagtactggaattttatataaaactaaaagcacaaatgtgggaaggatactat 368
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 cagaaattagtactg-aattttatataaaactaaaagcacaaatgtgggaaggatactat 567
Query: 369 gtagaataaattatgctaggaaaattgattatcttacacagaataataaaatttgagctt 428
|||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 568 gtagaacaaattatgctaggaaaattgattatcttacacataataataatatttgagctt 627
Query: 429 ttccttaattgatatacaaagtcaacagtcaacttaaaatgcattaaaaacttatagctg 488
|||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 628 ttccttaattgatatacaaa---------caacttaaaatgcattaaaaacttatagctg 678
Query: 489 tctct 493
|||||
Sbjct: 679 tctct 683
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 892
Length adjustment: 10
Effective length of query: 483
Effective length of database: 882
Effective search space: 426006
Effective search space used: 426006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no195_l18.g1 MSMg01no195_l18.g1 CHROMAT_FILE:
MSMg01no195_l18.g1 PHD_FILE: MSMg01no195_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:02 2005
(456 letters)
>mm_chr5_71935312_71936167
Length = 856
Score = 820 bits (424), Expect = 0.0
Identities = 448/456 (98%)
Strand = Plus / Minus
Query: 1 tcattggacacctaggggaacctgcttcagaaacatcagttgcagctccagtccaggaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 tcattggacacctaggggaacctgcttcagaaacatcagttgcagctccagtccaggaat 597
Query: 61 ctattcagagtggttttgtagcagaaactaaggcctttcctaagagcaagaattcaccag 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 596 ctattcagagtggttttgtagcagaaactaaggccttccctaagagcaagaattcaccag 537
Query: 121 tgtagggactctctagttagaagaaagatacttggttgaaagtgcctgtctactagagag 180
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 536 tgtagggactctctagttagaagaaagatatttggttgaacgtgcctgtctactagagag 477
Query: 181 aggctgttttataaaagaaatatccttccattggcacccaaacaatgccagaaactagga 240
|| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 476 agactgttttataaaagaaacatccttccattggcacccaaagaatgccagaaactagga 417
Query: 241 agaaatgaagaaaatttaaaaatgaatttcaagaacaaaaatgtactttaacccaaatct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 agaaatgaagaaaatttaaaaatgaatttcaagaacaaaaatgtactttaacccaaatct 357
Query: 301 ggtgatttgatgatcttttaatctttattgaaagacaggcatataaatcagatttcatcc 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ggtgatttgatgatcttttaaactttattgaaagacaggcatataaatcagatttcatcc 297
Query: 361 atactgcccacagcaccttgaaccactttcctcttaaatatcatgaacatatagcagaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 atactgcccacagcaccttgaaccactttcctcttaaatatcatgaacatatagcagaaa 237
Query: 421 aattaacacattgataggagtaccctagatggtatg 456
||||||| ||||||||||||||||||||||||||||
Sbjct: 236 aattaacgcattgataggagtaccctagatggtatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space: 377316
Effective search space used: 377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
