Query= MSMg01no195_o03.b1 MSMg01no195_o03.b1 CHROMAT_FILE:
MSMg01no195_o03.b1 PHD_FILE: MSMg01no195_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:14 2005
(264 letters)
>mm_chr5_114597759_114598422
Length = 664
Score = 420 bits (217), Expect = e-122
Identities = 250/263 (95%), Gaps = 8/263 (3%)
Strand = Plus / Plus
Query: 5 gaatttccccgatggctctggccagtcaagtggtggatggtgaaagtcccaccccggttc 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 205 gaatttccccgatggctctggccagtcaagtggtggatggtgaaagtcccaccctggttc 264
Query: 65 agcttgctcctgctcttctctgagccttcttaaccaccccacacctgtgcgttctctata 124
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 265 agcttgctcctgctcttctctgagccctcttaaccaccccacacctgtgtgttctctata 324
Query: 125 ggagcagctactatctaggaaagaccctttagcttgcccaagcttggtgtcagtccacct 184
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 325 ggagcagctactctctaggaaagaccctttagcttgcccaagcatggtgtcagtccacct 384
Query: 185 ttttttttctttttctttttctttttcttt-tttttttttttttttttttggcttttt-g 242
|||||||| |||||||||||||||||| ||||||||||||||||||||| ||||| |
Sbjct: 385 tttttttt----ttctttttctttttctttctttttttttttttttttttgg-tttttcg 439
Query: 243 agacagggttttttttt-gtttg 264
||||||||||||||||| |||||
Sbjct: 440 agacagggttttttttttgtttg 462
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space: 167025
Effective search space used: 167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no195_o03.g1 MSMg01no195_o03.g1 CHROMAT_FILE:
MSMg01no195_o03.g1 PHD_FILE: MSMg01no195_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:14 2005
(288 letters)
>mm_chr5_114646430_114647117
Length = 688
Score = 542 bits (280), Expect = e-158
Identities = 286/288 (99%)
Strand = Plus / Minus
Query: 1 tgagtgccagcatacccacaccaaagaccagggcccacccttcgccacaagtctgcagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tgagtgccagcatacccacaccaaagaccagggcccacccttcgccacaagtctgcagtt 429
Query: 61 ggtgtagacacagggacccacacttgcctcatctgggttttcgctggtgatcctggctgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ggtgtagacacagggacccacacttgcctcatctgggttttcgctggtgatcctggctgc 369
Query: 121 aatgacgtggcctcgagcaatgggagggctcaagggggtttcaaaaggaatgggggtcac 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aatgacgtggcctcgggcaatgggagggctcaagggggtttcaaaaggaatgggggtcac 309
Query: 181 tccccagggggactctccgtacagaagccgtatgtccttcagtcggtgcaggggcacgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tccccagggggactctccgtacagaagccgtatgtccttcagtcggtgcaggggcacgcc 249
Query: 241 catggcgatctaaggaagaacccatcacacaggttagtgtgctaggat 288
|||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 248 catggcgatctaaggaagaacccatcgcacaggttagtgtgctaggat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
