BAC Information

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BAC

Clone NameMSMg01-196A19
Chromosome5 (Build37)
Map Location 23,363,356 - 23,396,288
singlet/doubletdoublet
Overlap geneLOC671410
Upstream geneLhfpl3, EG625219, LOC100042101, LOC100042082, 4930580E04Rik, BC050254, Srpk2, Pus7, Rint1, 4933427G23Rik, Tomm7
Downstream geneDrctnnb1a, LOC627317, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn, Rheb, Prkag2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-196A19.T7 (MSMg01no196_a19.b1)MSMg01-196A19.TJ (MSMg01no196_a19.g1)
ACCAG384323AG384324
length760779
length of high quality
(start - end)		464 (54 - 517)264 (82 - 345)
definitionCHROMAT_FILE: MSMg01no196_a19.b1 PHD_FILE: MSMg01no196_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:27 2005CHROMAT_FILE: MSMg01no196_a19.g1 PHD_FILE: MSMg01no196_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,363,356 - 23,363,815)(23,396,025 - 23,396,288)
sequence
NNNCCTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTAGGCAATGGCAGCTATTATAATACCTACAGGCTATC
ATCAAGGCCACTTGGAACTGGGCGTCCCCTCAGTGGTGCCTTTCCTTGTC
TTTGCAATCCCGGTCAATACTCCACTATTGGCCATAGATATTAAGGATTA
TTTTTTTCCCACCCCCTTGGACCTGCCTAGGGCTAAAAAGCTGCCTTTGT
CCACACATAACATCTAACTGAAGACTTGTAAGACAAGCAGATGCTGACAG
TCTTGGGATCTTCTAGCAACAGATGAACTCTCTTGCCAGAGCCTAATGGC
TACTGAACTTGGGGAAACCTTGATGATGTATATATAGATGTCTAAAACAG
ATGTTAATACCTTTACAAACTATACAAACTCACTCTCAGTTTAATCCACC
AAATCTTTGATTCAGTAATCCTTGGTCTTCCTAGCCCCTCTGGCTTATAT
TGTGCTACCCCTCTGGCCTATGTTGTGTTTTATTTTGATGCTTACACCCC
ACCTGACCCAAGATTTTCATTGCTAATAATATAAGAGAAAGTCCCTCCAA
TGATGCCTCTCCTTTATATTATAAAAGAAGACAAGGGTCTGTGTCATTAT
CGTACATTTGTTTTGAAACTTTACCCTTCTGTCCCCCCTGCTTTCCCTTC
GAATCCCGTTTGCCTCCTTTGACCCTTTTCTCCGTTTCTCCCAGTTTCAC
CGTTTTTACG

NTTTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTAATTTGTATATATTGT
ATATATTTTCTGTTGCCTGCATTTTTATTTCGCCTAGGCTAGTTTCTGAA
AGTATATTAATGCTAAGCAACACTACTTTCTCAGTTACTGGAGAATCTGC
TTTGAATATATGCTCAATTTGGATTTAATAATTATAATGATTTGGATGTC
TATGTTTTAAAAGCAACTTTGATCTACCTCATGAGTCCAAGATTTTATGT
TGGCTGTGCCTTATCAATATGGGTAATATGAATTATGAAGTTAATGCTCC
TACATTGTTACCATTTCTTTTTTTTTCCCCCCCCCCCCGCTCCTAATTAA
AGTTTGCTTTCCATTTCCTGTCCCCCCCCCCATAATAAAAAAAATTTCTG
CTTTCGCCGGCACCTTTTTTTCACTCAACCTTTCTTCCTTTTTTCCCTTT
TTTTCCCCCACTTCCTCATCCTTTCCCATTTCTTCCCCCCCTTTCCCCCT
CCATTTTTCCAATTTTTTTTTTTTCGTTTCCCCCCCCCTCCCTTATTCCC
TTCCCATTTTTCCCATTTTTCGCTCCATTATCCTCCCTTTTTCCCCTTTC
CTTCCCCCCCTTTTTACCCTTTTTTCCCCCCTTCCTTTCCACTTCTTCCC
TTCCCATTTTCCCTTTCCTCCTTTTTCCCCTTTCCCCTTTTCCTCCCAAT
TGCTAGTCACCATCTCCCTTTTCCCATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no196_a19.b1 MSMg01no196_a19.b1 CHROMAT_FILE:
MSMg01no196_a19.b1 PHD_FILE: MSMg01no196_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:27 2005
         (464 letters)



>mm_chr5_23363152_23364015
          Length = 864

 Score =  882 bits (456), Expect = 0.0
 Identities = 459/460 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaggcaatggcagctattataatacctacaggctatcatcaaggccacttggaa 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaggcaatggtagctattataatacctacaggctatcatcaaggccacttggaa 264

                                                                       
Query: 65  ctgggcgtcccctcagtggtgcctttccttgtctttgcaatcccggtcaatactccacta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgggcgtcccctcagtggtgcctttccttgtctttgcaatcccggtcaatactccacta 324

                                                                       
Query: 125 ttggccatagatattaaggattatttttttcccacccccttggacctgcctagggctaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttggccatagatattaaggattatttttttcccacccccttggacctgcctagggctaaa 384

                                                                       
Query: 185 aagctgcctttgtccacacataacatctaactgaagacttgtaagacaagcagatgctga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagctgcctttgtccacacataacatctaactgaagacttgtaagacaagcagatgctga 444

                                                                       
Query: 245 cagtcttgggatcttctagcaacagatgaactctcttgccagagcctaatggctactgaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagtcttgggatcttctagcaacagatgaactctcttgccagagcctaatggctactgaa 504

                                                                       
Query: 305 cttggggaaaccttgatgatgtatatatagatgtctaaaacagatgttaatacctttaca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttggggaaaccttgatgatgtatatatagatgtctaaaacagatgttaatacctttaca 564

                                                                       
Query: 365 aactatacaaactcactctcagtttaatccaccaaatctttgattcagtaatccttggtc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aactatacaaactcactctcagtttaatccaccaaatctttgattcagtaatccttggtc 624

                                                   
Query: 425 ttcctagcccctctggcttatattgtgctacccctctggc 464
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttcctagcccctctggcttatattgtgctacccctctggc 664


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no196_a19.g1 MSMg01no196_a19.g1 CHROMAT_FILE:
MSMg01no196_a19.g1 PHD_FILE: MSMg01no196_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:28 2005
         (264 letters)



>mm_chr5_23395825_23396488
          Length = 664

 Score =  503 bits (260), Expect = e-147
 Identities = 263/264 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctaatttgtatatattgtatatattttctgttgcctgcatttttatttcgcctaggcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 464 cctaatttgtatatattgtatatattttctgttgcctgcatttttatttagcctaggcta 405

                                                                       
Query: 61  gtttctgaaagtatattaatgctaagcaacactactttctcagttactggagaatctgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gtttctgaaagtatattaatgctaagcaacactactttctcagttactggagaatctgct 345

                                                                       
Query: 121 ttgaatatatgctcaatttggatttaataattataatgatttggatgtctatgttttaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ttgaatatatgctcaatttggatttaataattataatgatttggatgtctatgttttaaa 285

                                                                       
Query: 181 agcaactttgatctacctcatgagtccaagattttatgttggctgtgccttatcaatatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 agcaactttgatctacctcatgagtccaagattttatgttggctgtgccttatcaatatg 225

                                   
Query: 241 ggtaatatgaattatgaagttaat 264
           ||||||||||||||||||||||||
Sbjct: 224 ggtaatatgaattatgaagttaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space:   167025
Effective search space used:   167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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