Query= MSMg01no196_e05.b1 MSMg01no196_e05.b1 CHROMAT_FILE:
MSMg01no196_e05.b1 PHD_FILE: MSMg01no196_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:45 2005
(322 letters)
>mm_chr5_51441960_51442681
Length = 722
Score = 569 bits (294), Expect = e-166
Identities = 312/318 (98%), Gaps = 2/318 (0%)
Strand = Plus / Plus
Query: 5 gaattcctatcacctttagaatcacctaaactttttgtgctaataattccataaatattg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctatcacctttagaatcacctaaactttttgtgctaataattccataaatattg 264
Query: 65 tttatactttttatttcaaatatccattccctgaatatgtctgcccttattggctatggt 124
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 265 tttatactttttatttcaaatatccattccctgaatatgtctgccattattggctatggt 324
Query: 125 tttgatctagaagccccatatcttactatattctcccccactctgttcttgctcacctcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttgatctagaagccccatatcttactatattctcccccactctgttcttgctcacctcc 384
Query: 185 ttacgcagtgagagacatttttatactatttcaccataaattaatttattcaggggctgg 244
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 385 ttacgcagtgagagacatttttatactatttcaccataaattagtttattcaggggctgg 444
Query: 245 agacctggctcagtc-agtgcagcgccttttcactgttaataactgatggctggctattc 303
||||||||||||||| | || ||||||||||||||||||| |||||||||||||||||||
Sbjct: 445 agacctggctcagtcca-tgtagcgccttttcactgttaagaactgatggctggctattc 503
Query: 304 agaaggactgttttcctg 321
||||||||||||||||||
Sbjct: 504 agaaggactgttttcctg 521
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space: 223169
Effective search space used: 223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no196_e05.g1 MSMg01no196_e05.g1 CHROMAT_FILE:
MSMg01no196_e05.g1 PHD_FILE: MSMg01no196_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:45 2005
(292 letters)
>mm_chr5_51477551_51478242
Length = 692
Score = 526 bits (272), Expect = e-154
Identities = 286/292 (97%), Gaps = 3/292 (1%)
Strand = Plus / Minus
Query: 1 tgtggacgcaatacagacaataaaagagaaggattcaggaagatgggagcatctcaagct 60
|||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||
Sbjct: 652 tgtggacgcaatacagacaataaacg---aggattcaggaagatgggagtatctcaagct 596
Query: 61 ggctccatgccatcttcctacaaaatctatacctgaacacatcatattcacacagcagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ggctccatgccatcttcctacaaaatctatacctgaacacatcatattcacacagcagga 536
Query: 121 aagcaaagaccagggaacatctgaaagacgtcagaagaaataaggaaataagacttagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 aagcaaagaccagggaacatctgaaagacgtcagaagaaataaggaaataagacttagtg 476
Query: 181 aggatcagcacaaagtaattgtagggccagataaaaaagattgcaaacatctggggaaaa 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 aggatcagcacaaggtaattgtagggccagataaaaaagattgcaaacatctggggaaaa 416
Query: 241 tataaatgggggcaaaattaattatagtaggattactgtttcacctttggga 292
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tataaatgggggcaaaattaattatagtaggattactgtttcacctttggga 364
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
