Query= MSMg01no196_i13.b1 MSMg01no196_i13.b1 CHROMAT_FILE:
MSMg01no196_i13.b1 PHD_FILE: MSMg01no196_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:07 2005
(313 letters)
>mm_chr5_101225904_101226617
Length = 714
Score = 592 bits (306), Expect = e-173
Identities = 309/310 (99%), Gaps = 1/310 (0%)
Strand = Plus / Plus
Query: 5 gaattccatcctcattttaaaaaaa-aaatgtcccagcaaaggactatcccaatgatatc 63
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatcctcattttaaaaaaacaaatgtcccagcaaaggactatcccaatgatatc 264
Query: 64 actatatgcaaattatcctctgaatacatattatcatcaccaaacaaaagaaacaagtcc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actatatgcaaattatcctctgaatacatattatcatcaccaaacaaaagaaacaagtcc 324
Query: 124 agagagttgctctgacttgcctaaacagtactgctggcttattatgggatatcaggatgc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agagagttgctctgacttgcctaaacagtactgctggcttattatgggatatcaggatgc 384
Query: 184 taagaaacatttttttaaaagtcagaacaggatctcaccttactgaggctacacactcct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taagaaacatttttttaaaagtcagaacaggatctcaccttactgaggctacacactcct 444
Query: 244 gatcctcctgcctgtttcctgaatgcctcaccatgcctggttttaggaggtgttgggatc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gatcctcctgcctgtttcctgaatgcctcaccatgcctggttttaggaggtgttgggatc 504
Query: 304 aaacccaggg 313
||||||||||
Sbjct: 505 aaacccaggg 514
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 714
Length adjustment: 9
Effective length of query: 304
Effective length of database: 705
Effective search space: 214320
Effective search space used: 214320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no196_i13.g1 MSMg01no196_i13.g1 CHROMAT_FILE:
MSMg01no196_i13.g1 PHD_FILE: MSMg01no196_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:07 2005
(291 letters)
>mm_chr5_101334030_101334717
Length = 688
Score = 480 bits (248), Expect = e-140
Identities = 275/286 (96%), Gaps = 5/286 (1%)
Strand = Plus / Minus
Query: 8 cacctgcgtacaaggcttgtttactagttaggcacagcggagcccagccccatcttataa 67
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 600 cacctgcgtacaaggcttgtttactagttaggcacagcggaggccagcgccatcttataa 541
Query: 68 tggcgattgctcgcggca--aacggctctcctcagcgattgcttgcggcacaactctcca 125
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 540 tggcgattgctcgcggcatgcacggctctcctcagcgattgcttgcggcacgactctcca 481
Query: 126 cactatggcagaccagcaaagctggcaaggcctatgcagagaagcgccacaaagaaggac 185
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 480 cactatggcagaccagcaaagctggcaaggcctacgcagagaagcgccaca---aaggac 424
Query: 186 ttcccagagcaccaaagctaaacaaagtggtccagttgagagccttgcattgggatgtaa 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ttcccagagcaccaaagctaaacaaagtggtccagttgagagccttgcattgggatgtaa 364
Query: 246 gcacatccttactgagaagaaccagcccagagcaggattcaagctc 291
||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 363 gcacatccttactgagaagaaccagtccagagcaggattcaagctc 318
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 688
Length adjustment: 9
Effective length of query: 282
Effective length of database: 679
Effective search space: 191478
Effective search space used: 191478
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
