CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGCAGAGGCCATGGAGAAAGGTGGCTTTCTGGCTTGCTCTCTGT
GGCTTGCCTAACATGCTTTTTAAAATGCAACTCACAAGTTGCTTAGGAGT
GGCACTGTTCATATTCTGCTGGGGCCTCCAAATCACTCATTAACCAAGAA
AACTCCTCCCACAGACTTGCCTCTGGGCTTGTCTGAACAGTTGAAGTTTC
CTCTGCCAGGCACTGCTACATTGTGTCAAGTTGATAAAAACTAACCAGTA
CAATTGATCCCTTGTCATATTGACACACAAATGCACCACTATTAAACCAT
AACCTTTCTTTTCTTACTTGTCTCAAAATATCCCCTGAGAAGTCATATAA
AACACAGTACACCCTTAAAAGTGCCACAAACTTTAAATTTTTCTACACTT
TTTAAAATTCAAGGTCGCTTTAGAAATTCAAAGTCACTTAATTGTAGCCT
CTTTGTAAAATCAAAAACAAATTACATTCTTCCTTAGTCCAAGAAAGGAA
AAACCAGGAAACAGCCATGCGCAGATCAAAGCAAAGCCAATCTTCAACAG
TATAAATAAATGTGTCCAACATGATCTTGTGGGCTGCAAGGGGCTTAGGT
AGTCTTATCTCTCCGGTCATGGCACTCACAGCACACAGCTTATTTCTTGG
ACCCAGATCTG

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCATTAAACCTTCAGGTACTGGC
TACTGTCCACTAACTACCCTACTGAGGATAAGACCCCATGGCTTGCCCAT
AAGCTCATGGCTTGTAATGGGGGAGGGATGAGCTGAAGCTGGGGCTTGCC
TGGGGAGCGGATCTGTGCAGAGTGGTTTAGAACCCCAGACTGGAAATCTG
GGAGATGTGTAGCCAGTGTTCAACAGTACAGTGAACATTCCCTCGGAGGG
AAGAGGACACTTGAATTAAAAAAAAAATGGCAGAGACAAGGTGTTCCAGG
CCAGCGTGTACCAGGCACCATCCCCTTGTGGACATATGCTCTTTTCTTGG
CCTTTGAAACGGCTTCCCATGTCCCTGAGAGCATAATAATGTAAATGAAT
ATCAGATCTTTACTCGGTAATTGAGAGCAAAGAGAAGGCCATGCTAAGTC
AAATTAATTTGCTCGGATATAGCCCAAGCAGGTCTCTGCGGAAGGGGCAG
TGACTTTACAGTGGTCCGAGGGTATCTCTCACAGGAGCCGGAACGTGAGC
ACAGGTTGCCACTAGGCCTGTCCTCTGTGGTGCCTCTTACCCTACGCCAC
TGCCGCGCTATCGCCTTGCCCTCTCTCCCTCTCCTTTCTTCTTTTGTTTC
CGATATTCCCGTTC

Query= MSMg01no196_m04.g1 MSMg01no196_m04.g1 CHROMAT_FILE:
MSMg01no196_m04.g1 PHD_FILE: MSMg01no196_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:25 2005
         (483 letters)



>mm_chr5_113118949_113119836
          Length = 888

 Score =  905 bits (468), Expect = 0.0
 Identities = 481/488 (98%), Gaps = 5/488 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcattaaaccttcaggtactggctactgtccactaactaccctactgaggataagacccc 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 tcattaaaccttcaggtactggctactgttcactaactaccctactgaggataagacccc 260

                                                                       
Query: 61  atggcttgcccataagctcatggcttgtaatgggggagggatgagctgaagctggggctt 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 atggcttgcccataagctcatggcttgcaatgggggagggatgagctgaagctggggctt 320

                                                                       
Query: 121 gcctggggagcggatctgtgcagagtggtttagaaccccagactggaaatctgggagatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcctggggagcggatctgtgcagagtggtttagaaccccagactggaaatctgggagatg 380

                                                                       
Query: 181 tgtagccagtgttcaacagtacagtgaacattccctcggagggaagaggacacttgaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtagccagtgttcaacagtacagtgaacattccctcggagggaagaggacacttgaatt 440

                                                                       
Query: 241 aaaaaaaaaa-----tggcagagacaaggtgttccaggccagcgtgtaccaggcaccatc 295
           ||||||||||     |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaaaaaaaaaaaatggcagagacaaggtgttccaggccagcgtgtaccaggcaccatc 500

                                                                       
Query: 296 cccttgtggacatatgctcttttcttggcctttgaaacggcttcccatgtccctgagagc 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccttgtggacatatgctcttttcttggcctttgaaacggcttcccatgtccctgagagc 560

                                                                       
Query: 356 ataataatgtaaatgaatatcagatctttactcggtaattgagagcaaagagaaggccat 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataataatgtaaatgaatatcagatctttactcggtaattgagagcaaagagaaggccat 620

                                                                       
Query: 416 gctaagtcaaattaatttgctcggatatagcccaagcaggtctctgcggaaggggcagtg 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctaagtcaaattaatttgctcggatatagcccaagcaggtctctgcggaaggggcagtg 680

                   
Query: 476 actttaca 483
           ||||||||
Sbjct: 681 actttaca 688


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 888
Length adjustment: 10
Effective length of query: 473
Effective length of database: 878
Effective search space:   415294
Effective search space used:   415294
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)