Query= MSMg01no196_n21.b1 MSMg01no196_n21.b1 CHROMAT_FILE:
MSMg01no196_n21.b1 PHD_FILE: MSMg01no196_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:33 2005
(514 letters)
>mm_chr5_89654523_89655435
Length = 913
Score = 886 bits (458), Expect = 0.0
Identities = 496/510 (97%), Gaps = 5/510 (0%)
Strand = Plus / Minus
Query: 5 gaattccatcttttctcaggagtttacaaaagcttctatttggatggaagtgcactgtac 64
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 888 gaattccaccttttctcaggagtttacaaaagcttctatttggatggaagtgcactttac 829
Query: 65 tcttccttagaaaggttctattatacaataccttgaaaaaccacatgttctggtgtctac 124
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 tcttccttag--ag--tctattatacaataccttgaaaaaccacatgttctggtgtctac 773
Query: 125 tgcctgccagacattgtgttattcacttggtattcattatcaatgctcagaacaataaca 184
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 772 tgcctgccagacattgtgttactcacttggtattcattatcaatgctcagaacaataata 713
Query: 185 atgctaccctcccacagatgagttcatggtggctcaaggatgtttgctgaccagcaggaa 244
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 712 atgctaccctcccacagatgagttcatggtggctcaagggtgtttgctgaccagcaggaa 653
Query: 245 cctgtgccagttattgaactcaagtgaacatgattctaagcagctattgccatgggaatc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 cctgtgccagttattgaactcaagtgaacatgattctaagcagctattgccatgggaatc 593
Query: 305 ttattacaaccagtcaatgtgttgagtcgaaaatctagaaaagactagccacacacatgt 364
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 592 ttattacaaccagtcaacgtgttgagtcgaaag-ctagaaaagactagccacacacatgt 534
Query: 365 cacagtaactatgtggtagacatccagtcagggatagttttaattttgaaagcctaccat 424
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 cacagtaactatgtgatagacatccagtcagggatagttttaattttgaaagcctaccat 474
Query: 425 gacaggaaaaataattgcagccactgttgacttgaggatccagagcagagccaggcacaa 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aacaggaaaaataattgcagccactgttgacttgaggatccagagcagagccaggcacaa 414
Query: 485 cacctgcaggaaggtgaacaggtggactcg 514
||||||||||||||||||||||||||||||
Sbjct: 413 cacctgcaggaaggtgaacaggtggactcg 384
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 913
Length adjustment: 10
Effective length of query: 504
Effective length of database: 903
Effective search space: 455112
Effective search space used: 455112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no196_n21.g1 MSMg01no196_n21.g1 CHROMAT_FILE:
MSMg01no196_n21.g1 PHD_FILE: MSMg01no196_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:33 2005
(291 letters)
>mm_chr5_89616153_89616842
Length = 690
Score = 516 bits (267), Expect = e-151
Identities = 285/291 (97%), Gaps = 1/291 (0%)
Strand = Plus / Plus
Query: 1 cactggcgcctggtgctctccattcttttcagaggggcacatccgtcctctatcctgacc 60
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 201 cactggcgcctggtgctctccattcttttcaga-gggcacatcagtcctctatcctgacc 259
Query: 61 tgtgactggtctattggatcagcctcaaagtcagaaccttctaggggcaagcttctagga 120
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 260 tgtgactggtctattggatcagcctcaaagtcagaaccttctagcgtcaagcttctagga 319
Query: 121 ggaacatcacagcataatgtgtgattgtctgtggcagatggctcaaggcattcacatgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggaacatcacagcataatgtgtgattgtctgtggcagatggctcaaggcattcacatgaa 379
Query: 181 tgctcttcaagagtcccacaccagcaaacgattgccagcatgaaacaatgctgctattgc 240
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 380 tgctcttcaagagtctcacaccagcaaacgattaccagcatgaaacaatgctgctattgc 439
Query: 241 tgcatacttggaacaaaagaaaagggagcttaaagatacagcaggatagga 291
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgcatacttggaacaaaagaaaagggagcttaaagatacagcaggatagga 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 690
Length adjustment: 9
Effective length of query: 282
Effective length of database: 681
Effective search space: 192042
Effective search space used: 192042
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
