BAC Information

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BAC

Clone NameMSMg01-197B09
Chromosome5 (Build37)
Map Location 77,415,780 - 77,465,033
singlet/doubletdoublet
Overlap geneSrp72, Arl9, 1700023E05Rik
Upstream geneGabarapl2-ps5_758.1, Srd5a2l, Tmem165, Apc-ps1, Clock, Ube2n-ps1, EG665055, Pdcl2, Pafah1b1-ps3, Nmu, LOC665065, EG639545, Exoc1, Cep135, LOC100039117, A730089K16Rik, LOC665107, LOC100039299, C530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics
Downstream geneHod, Spink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197B09.T7 (MSMg01no197_b09.b1)MSMg01-197B09.TJ (MSMg01no197_b09.g1)
ACCAG384956AG384957
length700723
length of high quality
(start - end)
318 (45 - 362)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no197_b09.b1 PHD_FILE: MSMg01no197_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:50 2005CHROMAT_FILE: MSMg01no197_b09.g1 PHD_FILE: MSMg01no197_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,415,780 - 77,415,888)(77,464,754 - 77,465,033)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAATGTCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCG
AAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGGAATGAA
ATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACA
TATAATAAAAATAAATAAATCTTTAAAAAAAAAATAAAAAAAAAAAAAAA
AAAGAATTCAATGTCACCTTACCCCCCACCCCCAACCATGTAAGACTGTC
TCAAAAAATAAAAATAAGAACATGTTTGCAATAGATTATTTGCTTTCAGA
ATGCTATATGTTTTATTTGCCCTGCTTTCTTAAGAAATGCAAGCTACTCG
ATAATTTTGGTTTTCCCCCACCCCCTCATGCTGGGGGTTGAACTCAGAGC
CTTCAGAGGGCAAAGTTCACACTGGTTGCTCTGCAAGAAGTTTCAGGAGT
TGATTCTTCGTGTTTCTGCCCAGTTGAGAAAAGATCTTACGCAAAGGAAA
TAGTGAGCGCGCTACATGCATGTTGTCTCCTAAGAGTGGCTTCCATGAGT
GTCTGTTGCAGAAGAATAGGGGTTTACTTAGCCACGATTCAAGCAAGGTT
GTTGCCTTCTTCACTGTGTATCTAAACTCTAAATGGCATGGTTTGTAGAA

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTTGTCACACGAACGATTTCCAG
GGAGAGCATGAAGCGCAGAGCTCCTTGTGGCCCAATGGGATGCAAACAAT
GAAAAAGATTGGCGCTACAACCATTGGGGGAAATAAAGGAGGGACAACGG
CAATGTCTCCTGATCCAGTCTAAATGCCCCACTAGTAGAAGAGCTAGAGA
TCAAGTGTGATGTTCTCGGAAGCACACAGCGACGAAAAGAATTTGCTCTA
AACTGAAGCAATCCTCAATCTAAAAGGGTGGTGTGCACAAAGTAAGGCAG
CGGGGAACACTTGTTAACATTCTACACCACATGCAAAGAGTGGGCTATTT
CAGCAAATATTTCTAGTGAAGAAACAATGTGTCAAAAAGACAGAGCAGTG
AGTGCTAGTAATAGTCCCCAAATGTGTGGCCCTGTGTCCTAATTGGAGCA
ATTAAAGGATAAAAATAATTTAATACCATTTTTATATACAGTCTAGCCTA
GCCTAGTATTACCTAACTAACTAGCCCAGATTAGCCTTGAATTTGTGATC
CTTCTGCCCCTGTCTCTGTCTCTTTAAGTACTGCAATTAGAGTATGCACC
ATGAATTAGAGCATGCACCATGAATTAGAGCATGCACCATGAATGACTTT
GTGATCCTTCTGCCCCTGTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_b09.b1 MSMg01no197_b09.b1 CHROMAT_FILE:
MSMg01no197_b09.b1 PHD_FILE: MSMg01no197_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:50 2005
         (318 letters)



>mm_chr5_77415373_77416090
          Length = 718

 Score =  211 bits (109), Expect = 5e-59
 Identities = 109/109 (100%)
 Strand = Plus / Plus

                                                                       
Query: 208 aagaattcaatgtcaccttaccccccacccccaaccatgtaagactgtctcaaaaaataa 267
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 aagaattcaatgtcaccttaccccccacccccaaccatgtaagactgtctcaaaaaataa 467

                                                            
Query: 268 aaataagaacatgtttgcaatagattatttgctttcagaatgctatatg 316
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 aaataagaacatgtttgcaatagattatttgctttcagaatgctatatg 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no197_b09.g1 MSMg01no197_b09.g1 CHROMAT_FILE:
MSMg01no197_b09.g1 PHD_FILE: MSMg01no197_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:50 2005
         (282 letters)



>mm_chr5_77464554_77465235
          Length = 682

 Score =  534 bits (276), Expect = e-156
 Identities = 279/280 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttgtcacacgaacgatttccagggagagcatgaagcgcagagctccttgtggcccaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 agttgtcacacgaacgatttccagggagagcatgaagcgcagagctccttgtggcccaat 421

                                                                       
Query: 61  gggatgcaaacaatgaaaaagattggcgctacaaccattgggggaaataaaggagggaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gggatgcaaacaatgaaaaagattggcgctacaaccattgggggaaataaaggagggaca 361

                                                                       
Query: 121 acggcaatgtctcctgatccagtctaaatgccccactagtagaagagctagagatcaagt 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 360 acggcaatgtctcctgatccagtctaaatgccccactagtaggagagctagagatcaagt 301

                                                                       
Query: 181 gtgatgttctcggaagcacacagcgacgaaaagaatttgctctaaactgaagcaatcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gtgatgttctcggaagcacacagcgacgaaaagaatttgctctaaactgaagcaatcctc 241

                                                   
Query: 241 aatctaaaagggtggtgtgcacaaagtaaggcagcgggga 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 aatctaaaagggtggtgtgcacaaagtaaggcagcgggga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)