BAC Information

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BAC

Clone NameMSMg01-197L13
Chromosome5 (Build37)
Map Location 88,406,935 - 88,407,124
singlet/doubletsinglet
Overlap gene2310003L06Rik
Upstream geneLOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076
Downstream gene4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1, Rufy3, Grsf1, Mobkl1a, Dck, Mkrn1-ps1, Slc4a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197L13.T7 (MSMg01no197_l13.b1)MSMg01-197L13.TJ (MSMg01no197_l13.g1)
ACCAG385332AG385333
length713707
length of high quality
(start - end)
194 (46 - 239)229 (77 - 305)
definitionCHROMAT_FILE: MSMg01no197_l13.b1 PHD_FILE: MSMg01no197_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:42 2005CHROMAT_FILE: MSMg01no197_l13.g1 PHD_FILE: MSMg01no197_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGATCCTCCTGCCTTTGACTCATTGGTGTGAGATTGTAGGCTTA
CAGTATCATATCCTAGCCCAGCGTCTTTGTTAGATATAGGGAATGTTGTC
ATTATCACAGAAAAGGAAATTATGATAGGTATAGATCCAAGTTATTTGTT
TAAAAATAGAAATATCATCAATTAGATAGAGGAAGACACGAAATAAAGTC
ATCCTCTGAATTGGCTCATTTATTGGAGGGTTTTTAAAATGTTCATTAAT
CACTCAGTGTTTTGTGAATCTTTATTCAGGATAAGGTGTGCTATACAGAG
AAGAGTGTTTATTTTTTTTCCCACCCCCACCCCGTATATACACCATTCCA
AAAGGATAAGAAGTAAGCCATAGAACACTAATAGCTGCCTTATATGATTA
TCTTTATGTGCTGAACAGACTTGGAACCATGTAGATAATATTCTTTCATC
AGCATTTAATTTTCAGTTAGCTATGGCAGATAAAGTAACAATTCCATCTT
CATTGATGCTAAAATTCAAATACCTTTAATTTTTATAATTGTTTTTGTGG
TCATGCCACCCCTTCTGTTACTAGTGTTTCTGTAAAGATCACCCGCATTT
ATTATAGGACCCATATCTCTCTTAAAAGGTAAGTGCTACTAGTATCTATA
CCTTCCAAGCCCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAGGGCTAAAGAAAAACCCTGTC
TCTGTGGGATTCCCTAACTTTTCTTATGGTAAACTGTATCTGGCTAACAC
TGCGTCTATCAAAATAAAAACCAATCTCTTTTAATATTTGAAATATCTAC
TTTTCTAGCCCTCTTGGTAAACCTAAATTTCAATTTACACAGAAGGCCAT
GTGTTGGAATGTCCTTGGAATGAAGATAGCATTTGTCACCTGTGTGTTCT
TGGGGCTGGGGGATGTATGTCTACTGTAGTTTTGCTGAAGGTGTAGATTG
ACCTGTTTGAAAGCACCCCCCCCTTACACAGTGAAGAGTAACATCACAAA
GCCTTTCTGGGGAAAGCTTAGGTACTTTATTTAGTTGGAAATTAGCAAGG
CACAAGCTTAGTCTCTGGGCTGGTTTTAAAATTGTAAAAAGGCCACAAAC
TCTCTGGAAGTGGGGGATGGGTTCTGAAGTAACTTTGTAAGGCAGTTAAG
AATATTTGAATCTCTAACATTGGAATGACCAATATACCAGTCTAACATTG
AGTTATAATGATTGCGTCCGCTGAAGAAAAGAAAACATCATTATGACTCC
TATAAATTGACTAATTTAAGTCAGAATATACAACCTCTGATGAATTATTG
CCCTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_l13.b1 MSMg01no197_l13.b1 CHROMAT_FILE:
MSMg01no197_l13.b1 PHD_FILE: MSMg01no197_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:42 2005
         (194 letters)



>mm_chr5_88406731_88407324
          Length = 594

 Score =  344 bits (178), Expect = 2e-99
 Identities = 187/190 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgatcctcctgcctttgactcattggtgtgagattgtaggcttacagtatcat 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gaattcatgatccttctgcctttgactcattggtgtgagattgtaggcttacagtatcat 335

                                                                       
Query: 65  atcctagcccagcgtctttgttagatatagggaatgttgtcattatcacagaaaaggaaa 124
           |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 334 atcctagcccagtgtctttgttagatatagggtatgttgtcattatcacagaaaaggaaa 275

                                                                       
Query: 125 ttatgataggtatagatccaagttatttgtttaaaaatagaaatatcatcaattagatag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ttatgataggtatagatccaagttatttgtttaaaaatagaaatatcatcaattagatag 215

                     
Query: 185 aggaagacac 194
           ||||||||||
Sbjct: 214 aggaagacac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)