BAC Information

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BAC

Clone NameMSMg01-198G06
Chromosome5 (Build37)
Map Location 15,183,729 - 15,183,994
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik
Downstream geneSpeer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198G06.T7 (MSMg01no198_g06.b1)MSMg01-198G06.TJ (MSMg01no198_g06.g1)
ACCAG385740AG385741
length802766
length of high quality
(start - end)
292 (122 - 413)289 (74 - 362)
definitionCHROMAT_FILE: MSMg01no198_g06.b1 PHD_FILE: MSMg01no198_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:36 2005CHROMAT_FILE: MSMg01no198_g06.g1 PHD_FILE: MSMg01no198_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:36 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TTCTTTTTTTCCCCTTGTTTTTTTCTTTATTTTCTCNNNNNNNNNCCXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTGTTATTCCCTTGACATCACCTGACTGGCCCATGAACCTTTGTG
GGGCATTTTCTTAATTGATATGCTCAGCCAAGGCATAGCTCAACCTGGGC
ACTTACATCCTGTGTGGCTGGGCCTGGATAAAATCAAAAAAACAAAACAA
AAACATAAAAAACAAAAAACAAAAAATTATCTGAGAACTATCCAATTAAG
TGGAACCTCTCTTGGGTCTCTTTTTCAGTTCCTGCCACATAAATTCTTTC
CTGAGCCAATATGCTTTGGGTCAGTGTCTTAGCAGAACAAGAGAGACAGA
GGGCATCACTATTTATTTCTCACCTCCCTCGAAAACACACCTAAGGTCAC
TAAGCCTCAGCATCTGCCCCTCCCAGATAAGCTGCCTTGAATAAAACTTT
CTTACTCCTCTCTTTTAGTCGTCAGTCTGTGCTGGAGTTTTAGTCATAGC
ATCATGATAACAACCTTACAGAGAAAGAGAATTTTGAAATTATTTCCATT
TTGTTCTGCTGGTTTGGTTTGGTTTGGCTTGAGACAATGTCTCTCACTAT
AACCTTAACTGGAGCTCATTGTATAGCTAAAGTCGACCTCAAACTGATAG
CTATCTTCTTACCATAGCCTCCCGACTGCTTTAGATATAGGTTGCGACAC
CATACCTGTGGATCCATCTGTTTACTACTATTTGATCCTGTCTTATCCCA
TC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTTTGGCAGTACCTCAGAAAAGAGAA
CATAGTACCCAGGTATACCACTTCTGGATATATATCCAGAAGATGTTGTA
ATAAGGAAACATGTTACACTATGTTCATAGCAGCCTTATTTTAATAGCCA
GGAGCTGGAAAGAACCCAGATGTCCTTCAGCAGAGGAATGGATACAGAAA
ACATGGTACATTTACACATTTACTCAGCTATTAAAAACAATGAATTCATT
AAATTCTTAGGCAAATGGATGGAACTAGAAAATATCATCCTAAGTAAGGT
AACTAAGTAACAAATTTATTTTTTACTGCCCCGCACTAACTGATAAGTGC
ATATTGGCCCCAAAGCTGGGCATACACTAGATACAATTCACAGACCACAT
GAAGCTCAAGAAGAAGGAAGACCAAAGGGTGGATGCTTCAGTCCTTCTTA
GAAGCAGGAACAAATTACTCGCAGGAGGAAATATGGAGAAATGGTATGAA
GCACAGACTGAAGGAAAGGCCATCCAGAGACTGCCCCACCTGGGGATCCA
TTCCATATACAGACACCCTACCCAGACAGTATTGTGAATGGCCAAAAGTG
CCTTATTGACAGGAGCCTTGATATCGTTATCCTCTGAGATGGTCTGCCAG
AGCCTGACAGATACAGAGGTATACTCTCGCAGCCAACCAATGGCCTTGAG
CACAGGCCCCTCAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_g06.b1 MSMg01no198_g06.b1 CHROMAT_FILE:
MSMg01no198_g06.b1 PHD_FILE: MSMg01no198_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:36 2005
         (292 letters)



>mm_chr5_15183505_15184196
          Length = 692

 Score =  368 bits (190), Expect = e-106
 Identities = 248/270 (91%), Gaps = 10/270 (3%)
 Strand = Plus / Plus

                                                                       
Query: 27  gtggggcattttcttaattgatatgctcagccaaggcatagctcaacctgggcacttaca 86
           ||||| |||||||||||||||| || | || ||||||||||||||| |||||||||||||
Sbjct: 225 gtgggccattttcttaattgatgtgataagtcaaggcatagctcaaactgggcacttaca 284

                                                                       
Query: 87  tcctgtgtggctgggcctggataaaatcaa--aaaaacaaaacaaaaacataa-aaaaca 143
           ||||| ||||||||||||||||||||  ||  |||||||||||||||| | || ||||||
Sbjct: 285 tcctgggtggctgggcctggataaaa--aacaaaaaacaaaacaaaaaaaaaacaaaaca 342

                                                                       
Query: 144 aaaaa-caaaaaattatctgagaactatccaattaagtggaacctct--cttgggtctct 200
           ||||| |||||||||||||||||||||||||| |||| |||||||||  |  ||||||||
Sbjct: 343 aaaaaacaaaaaattatctgagaactatccaactaagaggaacctctggc--gggtctct 400

                                                                       
Query: 201 ttttcagttcctgccacataaattctttcctgagccaatatgctttgggtcagtgtctta 260
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 401 ttttcagttcctgccacataaattctttcctgtgccaatatgctttgggtcagtgtctta 460

                                         
Query: 261 gcagaacaagagagacagagggcatcacta 290
           ||||||||||||||||||||||||||||||
Sbjct: 461 gcagaacaagagagacagagggcatcacta 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)