BAC Information

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BAC

Clone NameMSMg01-198H14
Chromosome5 (Build37)
Map Location 144,363,854 - 144,364,025
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik
Downstream genePscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1, 4930568B11Rik, Nptx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198H14.T7 (MSMg01no198_h14.b1)MSMg01-198H14.TJ (MSMg01no198_h14.g1)
ACCAG385788
length733880
length of high quality
(start - end)
---172 (136 - 307)
definitionCHROMAT_FILE: MSMg01no198_h14.b1 PHD_FILE: MSMg01no198_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:43 2005CHROMAT_FILE: MSMg01no198_h14.g1 PHD_FILE: MSMg01no198_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN
GTTCGGGGTTTGTTTATTTCTCGTTCTAGCGGGGCGGCAAGCACTTAAAA
ATNTNCCGGGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGCCATTGCAGAG
TCAGAAAGCTGCTCTTAAATTTCCATTTCATAATGTGAGTCACAGACGAT
ATAGAACCTTTAGAAGTTGTGGTGGTGAGGGGCTGCGGGAATAGTTAGAT
GGGTAAAGAACTTGTTGCTAGGCCCAGATCTCCAGCACCGCTGTAAAAGC
CAGGGATGGTGGTACCCACTTGTAATCCCATCACTGGGGCCAGAGATACA
GGGAGAGACAGGCTAGATGAGCCAGGATTTTTTTTCTCCGTTAGAAACCC
TGACTAAAGAAAGATTTTTTTTTTTTTTCCCCCCCCCCCCCCGNAGAGGG
AGAAGGGAAGAGAAGGGAGGGGGGGTGTGTCCCCCCAACCNCTCACCTTT
AAANTCTCTGGGGGGGGGTGGGCGCTCATATTCTACTCGTCTCGCACATT
AAAACAAAACTCTCATCTCAATTCACTAATAATGTAATAATTGTTAAATT
CTAGATATATCTATATACCATTTTTACATTTGGGTGCCGGGAAGAAACAA
GAACTCCCAGTTTGTTCAGGAAGTGTACCGGCTTTATTCTTGTCCGTATA
TGTAATTATTGCGCTCTATGCTTCCCCATATTTTTTTATTGATCTTGGTG
GATCGGTGGAATGGATATTCTTAAAAGCTCCCACCACAGTGAAAGAATTA
TATATTTTAGTGGGATAACTTGGACGCGCCCTTAGGTTAATATTGTGTTG
TGAGGTATTTTCCATATTTACATTATATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_h14.g1 MSMg01no198_h14.g1 CHROMAT_FILE:
MSMg01no198_h14.g1 PHD_FILE: MSMg01no198_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:43 2005
         (172 letters)



>mm_chr5_144363654_144364225
          Length = 572

 Score =  317 bits (164), Expect = 2e-91
 Identities = 170/172 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagccattgcagagtcagaaagctgctcttaaatttccatttcataatgtgagtcacag 60
           |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 372 aaagccattgcaaagtcagaaagctgctcttaaatttccatttcataatgtgggtcacag 313

                                                                       
Query: 61  acgatatagaacctttagaagttgtggtggtgaggggctgcgggaatagttagatgggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 acgatatagaacctttagaagttgtggtggtgaggggctgcgggaatagttagatgggta 253

                                                               
Query: 121 aagaacttgttgctaggcccagatctccagcaccgctgtaaaagccagggat 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aagaacttgttgctaggcccagatctccagcaccgctgtaaaagccagggat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 572
Length adjustment: 8
Effective length of query: 164
Effective length of database: 564
Effective search space:    92496
Effective search space used:    92496
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)