CCTTCTATATCGNNTATGACAAATCAAACTTACATCTTATCTCTTATTTA
CTTTTAATCCCTTTCNGNGGTNNNNNNNNCGGAATCTXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGGATTCAATCCTGGAA
AGAGAGAAAATAAAGACCACACCATCTCAGGGGTAAGGGGTGGGTATGGG
GAGAGAGAGAGAGAGAGAGCAGAAAAGACGAGAGAGAGAAGAGAGAAAGG
TAAAGAGGAAGAGAGGTGCTCCCCCCCGGAAGGGAAAAATGTGATCCCGG
GGCTGGGCAAGTTTCCCTAAAAACCCTTCTTGGTGGGGGGGGCCTTCCTT
CAATAACACAATTTATAAGTTCGTTCTTTCTTGTGATAGTTCTTATTATT
TTAACTAATACATCTATAAATTTTTTTATGATTAATTCTACAAAGAATGA
GTTTAAATCAGCCACGTTTTACAACAGGTTTTCTGGCGGTTCAATACTTT
TTTAGAAAAACATGAACAATAAAACATTTTAAACAAATAGTTTACACAAA
TTAAAAAAAACATAAATTTTACAGTTGGTATCATCATTATTCTCCCCCCT
CTACGTCGTAAAAGAGAATGACAATTTACCAAG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTTAATAGAGTTTGCTGTATTAATAT
ATCTATCCTCTATTGAAATTGTGTCTGAGACAGGAAACCTTGGTCCATCA
TGTGTGTTCTGTTTGTCTGAAGTTGCAGGGGTTTGAATGAGGACTCTAGG
TCCCATTAATCACCATCTGAATAAGCACAATGGAAAGTTGCCCTCAACAG
CCATGACACATAACAAAAGGTGTAAACCATGAAACAAAAGGTGCAACCAA
CTTTTGAGTTGCAAGTGCTTGGATATTCTTGAATATCACTCCACTCTTTC
TAGAAATGCAGGATGAAGCATGACACTACCACAGCAAGGCTCACTGTTAA
GTATTTTCTGTGTAACGTAAGCTCTGTTTTGTTTTTTGTTTGTTTGTTTG
TTTGTTTTGTTTTCTCCAAAGGCGTTTAAACAGAAATAACCTTCAGTTGT
TTCCTGAGCTGCTGTTTCTCGGGACTGCGAAGCTCTACCGGCTGTAAGTA
GACACTCAAGTGCTTGCTGTTGCTTTGCATCGACCTTGTGTTTTATTAAT
AGAGTTGAGGCTGTTTTCTTGAGCTTTCCTGGAATCCAGGCATTCATAGA
TTCTTAGATTGGAAGGTCGCCCTTTTGCTTTCTGACAGAAATGAAAGATC
TTCAGTGGCTCCAGAGG

Query= MSMg01no198_k03.g1 MSMg01no198_k03.g1 CHROMAT_FILE:
MSMg01no198_k03.g1 PHD_FILE: MSMg01no198_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:55 2005
         (644 letters)



>mm_chr5_48390954_48391997
          Length = 1044

 Score = 1172 bits (606), Expect = 0.0
 Identities = 633/644 (98%), Gaps = 4/644 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttaatagagtttgctgtattaatatatctatcctctattgaaattgtgtctgagacag 60
           ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 201 ttttaatagagtttgctgtattaatatgtctatcctctattgaagttgtgtctgagacag 260

                                                                       
Query: 61  gaaaccttggtccatcatgtgtgttctgtttgtctgaagttgcaggggtttgaatgagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaccttggtccatcatgtgtgttctgtttgtctgaagttgcaggggtttgaatgagga 320

                                                                       
Query: 121 ctctaggtcccattaatcaccatctgaataagcacaatggaaagttgccctcaacagcca 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 ctctaggtcccattaatcaccatctgaataagcacaatcgaaagttgccctcaacagcca 380

                                                                       
Query: 181 tgacacataacaaaaggtgtaaaccatgaaacaaaaggtgcaaccaacttttgagttgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgacacataacaaaaggtgtaaaccatgaaacaaaaggtgcaaccaacttttgagttgca 440

                                                                       
Query: 241 agtgcttggatattcttgaatatcactccactctttctagaaatgcaggatgaagcatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtgcttggatattcttgaatatcactccactctttctagaaatgcaggatgaagcatga 500

                                                                       
Query: 301 cactaccacagcaaggctcactgttaagtattttctgtgtaacgtaagctctgttttgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cactaccacagcaaggctcactgttaagtattttctgtgtaacgtaagctctgttttgtt 560

                                                                       
Query: 361 ttttgtttgtttgtttgtttgttttgttttctccaaaggcgtttaaacagaaataacctt 420
           ||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttgtttgtttgtttgttt----tgttttctccaaaggcgtttaaacagaaataacctt 616

                                                                       
Query: 421 cagttgtttcctgagctgctgtttctcgggactgcgaagctctaccggctgtaagtagac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cagttgtttcctgagctgctgtttctcgggactgcgaagctctaccggctgtaagtagac 676

                                                                       
Query: 481 actcaagtgcttgctgttgctttgcatcgaccttgtgttttattaatagagttgaggctg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 actcaagtgcttgctgttgctttgcatcgaccttgtgttttattaatagagttgaggctg 736

                                                                       
Query: 541 ttttcttgagctttcctggaatccaggcattcatagattcttagattggaaggtcgccct 600
           |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 737 ttttcttgagctttcctggaatccaggcgttcgtagattcttagattggaaggtcgccct 796

                                                       
Query: 601 tttgctttctgacagaaatgaaagatcttcagtggctccagagg 644
           ||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 797 tttgctttctgacagaaatgaaagatcctcagtggctgcagagg 840


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)