Query= MSMg01no199_c05.b1 MSMg01no199_c05.b1 CHROMAT_FILE:
MSMg01no199_c05.b1 PHD_FILE: MSMg01no199_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:35 2005
(320 letters)
>mm_chr5_62410138_62410858
Length = 721
Score = 574 bits (297), Expect = e-168
Identities = 312/317 (98%), Gaps = 1/317 (0%)
Strand = Plus / Plus
Query: 5 gaattccaagagaaatcctggaaatactaatgtactttttgttgttacaggatttcaatt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaagagaaatcctggaaatactaatgtactttttgttgttacaggatttcaatt 264
Query: 65 tggccttgcaatcaccagagaaggaccaagcccatgagacaaaaatatgtatcctagaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggccttgcaatcaccagagaaggaccaagcccatgagacaaaaatatgtatcctagaga 324
Query: 125 gattttagaaaatagtataaaactcctataaatatatattagtatttcctatcactttga 184
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 325 gattttagaaaatagtataaaactcctataaatatacatcagtatttcctatcactttga 384
Query: 185 cagtaagcattacttctctttgttataaactctgcatatactcaatactgcattgatgta 244
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 385 cagtaagcattacttctctttgttataaactctgcacatactcaatactgcattgatgta 444
Query: 245 tctcatctaaatacttttcatggagatcaaaaggacagggggagg-atgtccagagccag 303
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 445 tctcatctaaatacttttcatggagatcaaaaggacagggggaagtatgtccagagccag 504
Query: 304 atacttggggaactaag 320
|||||||||||||||||
Sbjct: 505 atacttggggaactaag 521
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 721
Length adjustment: 9
Effective length of query: 311
Effective length of database: 712
Effective search space: 221432
Effective search space used: 221432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no199_c05.g1 MSMg01no199_c05.g1 CHROMAT_FILE:
MSMg01no199_c05.g1 PHD_FILE: MSMg01no199_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:35 2005
(640 letters)
>mm_chr5_62502047_62503085
Length = 1039
Score = 1180 bits (610), Expect = 0.0
Identities = 625/630 (99%), Gaps = 1/630 (0%)
Strand = Plus / Minus
Query: 11 cccccaacatcctttgttcaagtgattggagtcctgacacacagtttgtccttgttggat 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 cccccaacatcctttgttcaagtgattggagtcctgacacacagtttgtccttgttggat 780
Query: 71 gaaaggaaatagtagagagaggatgagctaataactgtaaagtcagtattgaatcaaaat 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 gaaaggaaatagtagagagaggatgagctaataactgtaaagtcagtattgaatcaaaat 720
Query: 131 tatattgaaatcctgagagaaattaagatatgtgcttcgatcattaacatttgtcactac 190
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 tatattgaaatcctgaaagaaattaagatatgtgcttcgatcattaacatttgtcactac 660
Query: 191 tgagatttgctggtagatgagctgtcaatgaaccaacagaaacaggttttataagaagca 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 tgagatttgctggtagatgagctgtcaatgaaccaacagaaacaggttttataagaagca 600
Query: 251 actagacttgtcaaaaaaagtactttatgcccaaaggcatctgtataaatagaacttata 310
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 actagacttgtc-aaaaaagtactttatgcccaaaggcatctgtataaatagaacttata 541
Query: 311 aagtaaaagtgacaataaagtttgtagatcaggacagatagagtttaacttaattccaaa 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 aagtaaaagtgacaataaagtttgtagatcaggacagatagagtttaacttaattccaaa 481
Query: 371 atagacaggctctctatttctctcttagtgccttgagttccttataatgacatttatata 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 atagacaggctctctatttctctcttagtgccttgagttccttataatgacatttatata 421
Query: 431 tgacaggagtctctgagttttctttccttaaggagtaaatgtgaagggaaagcaatatta 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tgacaggagtctctgagttttctttccttaaggagtaaatgtgaagggaaagcaatatta 361
Query: 491 tgtttatcctagctgtccagtttaatatcgttttatagatatttccatggtttactttca 550
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tgtttatccaagctgtccagtttaatatcgttttatagatatttccatggtttactttca 301
Query: 551 tcaagtgtttactgtgtatgggttacatataatgtaaatccacaaactttccatgagttt 610
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 300 tcaagtgtttactgtgtatgggttacatataatataaattcacaaactttccatgagttt 241
Query: 611 catttttattaaaagtcctaaagaacacat 640
||||||||||||||||||||||||||||||
Sbjct: 240 catttttattaaaagtcctaaagaacacat 211
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1039
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1029
Effective search space: 648270
Effective search space used: 648270
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
