Query= MSMg01no199_f23.b1 MSMg01no199_f23.b1 CHROMAT_FILE:
MSMg01no199_f23.b1 PHD_FILE: MSMg01no199_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:54 2005
(372 letters)
>mm_chr5_71469079_71469850
Length = 772
Score = 617 bits (319), Expect = 0.0
Identities = 348/365 (95%), Gaps = 12/365 (3%)
Strand = Plus / Minus
Query: 4 ggaattcagtttcatatacacaagaaacttagtagtaggtggctcctgtcattcacctat 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ggaattcagtttcatataaacaagaaacttagtagtaggtggctcctgtcattcacctat 425
Query: 64 tattaaaaggtcatataaagagctcaaacttaactaggagtggttgtgtattaataatcc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tattaaaaggtcatataaagagctcaaacttaactaggagtggttgtgtattaataatcc 365
Query: 124 ctgcacttaggaacttcagggaagatggtcagggcagcagactaaataccaagccagtta 183
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ccgcacttaggaacttcagggaagatggtcagggcagcagactaaataccaagccagtta 305
Query: 184 gaactgggagtatataacatgatcctgtttctaaaaggaaaatcattgtctttaatattt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gaactgggagtatataacatgatcctgtttctaaaaggaaaatcattgtctttaatattt 245
Query: 244 aatactattcttatgtacactacttatggtttttcttaaattatctatctatctatctat 303
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aatattattcttatgtgtactacttatggtttttcttaaattatctatctatctatctat 185
Query: 304 ctatctatctatctatctatctatccatctatctatctcctgagtagcttttttttttac 363
|||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 184 ctatctatctatct------------atctatctatctcctgagtagcttttttttttac 137
Query: 364 tgcat 368
|||||
Sbjct: 136 tgcat 132
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space: 276969
Effective search space used: 276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no199_f23.g1 MSMg01no199_f23.g1 CHROMAT_FILE:
MSMg01no199_f23.g1 PHD_FILE: MSMg01no199_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:54 2005
(602 letters)
>mm_chr5_71392266_71393267
Length = 1002
Score = 1106 bits (572), Expect = 0.0
Identities = 594/610 (97%), Gaps = 15/610 (2%)
Strand = Plus / Plus
Query: 1 acccttgggtccatttgggatgggaatcgtctctgttcgaagtgcccagttacttcccga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 acccttgggtccatttgggatgggaatcgtctctgttcgaagtgcccagttacttcccga 259
Query: 61 gcttctttccttacttttcatcttctgagattgttttctcagttagttttttgttttcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gcttctttccttacttttcatcttctgagattgttttctcagttagttttttgttttcct 319
Query: 121 ttcctagacatccatgccatccacgttatgtaactggttgatgtggccatgtcatgtttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttcctagacatccatgccatccacgttatgtaactggttgatgtggccatgtcatgtttt 379
Query: 181 cttatgctctgtttacattctgtaaagttgagaggaaagtctaaattgattttaggttcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cttatgctctgtttacattctgtaaagttgagaggaaagtctaaattgattttaggttcc 439
Query: 241 tggtattttttttcctttgtctcctggtttgccaattggacagatatttaaaaggaatga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tggtattttttttcctttgtctcctggtttgccaattggacagatatttaaaaggaatga 499
Query: 301 gcttttgattctggtgacgtgttattgcttttatgttatctaccccccc--------att 352
|||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 500 gcttttgattctggtgacgtgttattgcttttatgttatcta-------ttttttttatt 552
Query: 353 tcttctctattcttatttacttccctctagaggcattttgtttagctgtttttcctttct 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tcttctctattcttatttacttccctctagaggcattttgtttagctgtttttcctttct 612
Query: 413 gatcttacatggaaatgcatataatttagttatttcagtgcttttctttgttaatataga 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gatcttacatggaaatgcatataatttagttatttcagtgcttttctttgttaatataga 672
Query: 473 cattaagtactatgaattttcctctgagcattgcctttactgaactctataaggattatt 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cattaagtactatgaattttcctctgagcattgcctttactgaactctataaggattatt 732
Query: 533 aaggctcactacgctgtgtttgcatgctctattcttcatacatagtcttatttcctaagt 592
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 aaggctcactatgctgtgtttgcatgctctattcttcatacatagtcttatttcctaagt 792
Query: 593 gacttactat 602
||||||||||
Sbjct: 793 gacttactat 802
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space: 587264
Effective search space used: 587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
