Query= MSMg01no199_l12.b1 MSMg01no199_l12.b1 CHROMAT_FILE:
MSMg01no199_l12.b1 PHD_FILE: MSMg01no199_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:22 2005
(476 letters)
>mm_chr5_76790066_76790945
Length = 880
Score = 725 bits (375), Expect = 0.0
Identities = 454/483 (93%), Gaps = 10/483 (2%)
Strand = Plus / Minus
Query: 1 tggaaccagccctggtaactacagctataaagattgttttgttaggggagg-aaactatg 59
|||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 680 tggaaccaaccctggtaactacagctataaagattgttttgttagggg-ggaaaactatg 622
Query: 60 ttttctatgcaggttgcatgcaagtggcttgtgatagcttctgcagctataggaaatgac 119
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 621 ttttctatgcaggttgcatgcaagtggcttgtgatagctactgcagctataggaaatgac 562
Query: 120 tgacttggataactgagtggtccataggttcctaaaaacatagatgagcctttagttgtg 179
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 561 tgacttggataactgagtggtccataggttcctaaaaaaatagatgagcctttagtttta 502
Query: 180 tttccaaaagagcaaatccgctggctaagtaacatcacatcataagtaaccttgatatta 239
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 501 tttccaaaagagcaaatccgctggctaagtcacatcacatcataagtaaccttggtatta 442
Query: 240 ttcaaacaaaaggctcccttcactctcaggaagtgccctgactgcgcatttctgtcttca 299
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 ttcaaacaaaaggctcccttcactctcaggaagtgccctggctgcgcatttctgtcttca 382
Query: 300 ttccctttcagacatgaaaa----aaatttttcatt-taaaaaaatgtaccgacgtcagg 354
|||||||||||||||||||| ||| ||||||| ||||||||||| || ||||||
Sbjct: 381 ttccctttcagacatgaaaaaaacaaa--tttcattaaaaaaaaatgtagtgaggtcagg 324
Query: 355 cagaggagaggggggg-atcaatagccagtgtaatctgcattagtccccaacatgggggt 413
|||||| | ||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 323 cagaggggggggggggaatcaatagccagtgtaatctgcattagtccccaacgtgggggt 264
Query: 414 aagggcatgcatggcatacacataagcaaaagttggcagtgatctaacaagagtgatcag 473
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 263 gggggcatgcatggcatacacataagtaaaagttggcggtgatctaacaagagtgatcag 204
Query: 474 tac 476
|||
Sbjct: 203 tac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 880
Length adjustment: 10
Effective length of query: 466
Effective length of database: 870
Effective search space: 405420
Effective search space used: 405420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no199_l12.g1 MSMg01no199_l12.g1 CHROMAT_FILE:
MSMg01no199_l12.g1 PHD_FILE: MSMg01no199_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:23 2005
(179 letters)
>mm_chr5_76666123_76666701
Length = 579
Score = 311 bits (161), Expect = 1e-89
Identities = 164/165 (99%)
Strand = Plus / Plus
Query: 1 tcccagagcccacccacagctgggtgcagtagcatgcctttgtaatcccaaaacttttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcccagagcccacccacagctgggtgcagtagcatgcctttgtaatcccaaaacttttgt 260
Query: 61 ggcaagatgggaggcaggaacagctggaatcccccaaagtacaagggacagctagactgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcaagatgggaggcaggaacagctggaatcccccaaagtacaagggacagctagactgg 320
Query: 121 ggtgtacaattgagagagagagagagagagagagagagagagaga 165
||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 ggtgtacaattgagagagagagagagagagaaagagagagagaga 365
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 579
Length adjustment: 8
Effective length of query: 171
Effective length of database: 571
Effective search space: 97641
Effective search space used: 97641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
