BAC Information

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BAC

Clone NameMSMg01-201C07
Chromosome5 (Build37)
Map Location 58,103,800 - 58,104,189
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041335, LOC100041349, LOC666455, LOC625721, EG666465
Downstream genePcdh7, LOC100041385
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-201C07.T7 (MSMg01no201_c07.b1)MSMg01-201C07.TJ (MSMg01no201_c07.g1)
ACCAG386811AG386812
length1,2171,230
length of high quality
(start - end)		396 (43 - 438)652 (90 - 741)
definitionCHROMAT_FILE: MSMg01no201_c07.b1 PHD_FILE: MSMg01no201_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:21:04 2005CHROMAT_FILE: MSMg01no201_c07.g1 PHD_FILE: MSMg01no201_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:21:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGAGCACTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTAAAAGAAAATGGCTCATAGAACATAGGGATATAAAAACAGGTTGG
ATGACTCTGAGGGGTCTTAGCTACCCGCGACCCTGCACACCCCCCACACC
CCCTGTGAACCACACAGAGCTGGAGATCGATGAAAAAGCAAGAGGAATTT
ATTGTTCCAACACTCTGCAGCTATCCTGCACCCAAAGGAGAAGTGAGCCC
AGGCAGCCCGTTCAACCATTTTTTATACAGTTTTCAGGGGTAGAATAGCA
CAGCAGCAAAAAGGCACACTATGAATGGCAGAACAGCATAACTTTTAAAC
TGATTGGCCCTTAGGAAATGAGGCAGGTGGCCAGGTGTCGGTAATCAGCC
TTTCCCTTGTGTGTGTGTGTGTGGGGGGGGGAAGNNNNNNNNNNNNNNTT
TTTTTTTTCCCCCCCCCNNNNNNNTTCCTCTTCCCCCAAAAAGGGGGGTT
TTTTTTTTTCTNTCTTCTCTTCTCTTATCTTTTTTTTTTTTTTTTGCTTC
CTCCTTTTTCTCTTTTTTTTCTTTTTTTCTCCTTTTCTTTCTTTTTCTCT
TTTCTTTTTTCTTTTTCCTTTTCCTTCTTCCTTTAATATTTTTTTTCTTC
TTTTTCTTTTATTTATTCTTCTTCTCCTCCTTTTCTCTATCTCTTTTCTT
TCCCTTATATTTCNTATCTCTTTTTCTATCTCTCTCCTTTTTTCTCTTCT
CCTCCTTCCTTTTTCTCTTCTTTTTTTTTCTTTTCTTTTTCTTACCTTCC
TTTTCTTTTTACTTTTATTTTTTCCTTCTTTTTTTTTCTCGTTTTCTTTT
TTCTTCTTTTTTTTTTTTTTTATCACCTTTTCTTTTCTTCTTCTCTTATC
TTTCTTTCTTCCTTTTTATTTCTTCTTTTTCTCTCTTTATTCTCTTTCTT
TTTCCTTCCTCTTTTTTTTTTTCTTTTTGTCTTCCTTCTCTTTTCCCTTT
CCTACTTTCACTTTTTCTTCATATCCTCTCTTTTCTTATCCTCTCACTTC
TTTTTTCTCTTTTTTTTTTTCTTTCTCCTTTTTTTTCCCTCTCTTTTTTT
TCTTATTCTATCTTCTCTATTATTCTCTTCCTTCCCCTTTCTTCCTCTTC
TCTTTCTTCTCCCTCTCCTCCTTTTTCCTCCTTTTCTTTTTTCTCCTCCT
CTTTCTCTCTTTCTTCT

CCAGTTTTTNNNNNAATGCATGTGAGGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTACTGTACTGGGGCATATG
ATCTTCGCAATACCAAGTGCCTCTCCTCCCATTGACGACCGACTAGGCCA
TCCTCCGCTACATATGCAACTAGAGGCACAGCTCTGGGGGGTACTGGTTA
GTTTATATTGTTGTTCCCCCTATAGGATTGCAGACCTCTTTATCTCCTTG
GGTACTTTCTCTAGCTCCTTCATTGGGGGCCCTGTGTTTCATCCAATAGA
TGACTGTGAGCACCCACTTCTGTATTTGCCAGGCATTGGCATAGCCTCAC
AAGAGAGAGCTATGTCAGGGTCCTGTCAGCAAAATCTTTCTGGAATATGC
AATAGTGTCTGGGTTTGGTGGAATATGGGATGGAACTCAGGGTGGGGCAG
TGTCTGTGTGGTCTTTCCTTCTGTCTCAGCTCTGAACTTTGTCTCTGTAA
CTCCTTCCATGGGAGTTTTGTTCCCCATTCTAAGAAGGAGCGAAGTATCC
ATCATTAGACTGTTTTTAAAATGATTTAAGAAACTTGATAGAAAAGATTT
CTACTTTAAAATTGGCAAAGATTTATGGTTGGTTGTTTTTCCATTTATAC
CGATTTAATTTGCCAAAAATATTCGATCTACACAGGTTTCCAACTTATGC
GTCACATTAACAAAGGTCCAACTAATTACACTGAGAGAGACATTGTGCCT
TATTTACAACAATTTATGGGACATTTCAAATTTATAATTTTTTTCACACA
TTCTCAACAATCTGAATTTGGAAAGCCAAAGGGACTTTGCCAAATGTAGG
CAAGCATTTGGTGAAAGACTTTTGGCAGTTTAAAAGCAGTGCATTTCTAC
TGAACATCACTTGAAGCTATTCCTTGTCCGTCCCTATGGCAAATTTTAAT
GGGCCAGTGCTTCCTGCCTGATTAATTGGAAAACATGTGCTATCTCCTTT
TTATTGATTGCGGCATTCTTTTATATATTGTGTTGCATTTTACCCGCAGG
ATAAAATTTTATTTCTCTAACTTTCTCTTTTATACCATTTCTTCACTTTT
TTACTCTTTTTTNTTTTTTATTTTTTTTTTTTTTGTTTTGTTTGTATTCT
CTTCTTTTCTCTTCTTTATTTTTCTTTTTTATATTTTTCCCTTTTTTTTT
CTTTATCTTTCCTTCTTCTATCTCTATCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no201_c07.g1 MSMg01no201_c07.g1 CHROMAT_FILE:
MSMg01no201_c07.g1 PHD_FILE: MSMg01no201_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:21:04 2005
         (652 letters)



>mm_chr5_58103138_58104189
          Length = 1052

 Score =  716 bits (370), Expect = 0.0
 Identities = 385/390 (98%)
 Strand = Plus / Minus

                                                                        
Query: 263  agagagagctatgtcagggtcctgtcagcaaaatctttctggaatatgcaatagtgtctg 322
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1052 agagagagctatgtcagggtcctgtcagcaaaatctttctggtatatgcaatagtgtctg 993

                                                                        
Query: 323  ggtttggtggaatatgggatggaactcagggtggggcagtgtctgtgtggtctttccttc 382
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 992  ggtttggtggaatatgggatggaactcagggtggggcagtgtctgtgtggtctttccttc 933

                                                                        
Query: 383  tgtctcagctctgaactttgtctctgtaactccttccatgggagttttgttccccattct 442
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 932  tgtctcagctctgaactttgtctctgtaactccttccatgggtgttttgttccccattct 873

                                                                        
Query: 443  aagaaggagcgaagtatccatcattagactgtttttaaaatgatttaagaaacttgatag 502
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 872  aagaaggagcgaagtatccatcattagactgtttttaaaataatttaagaaacttgatag 813

                                                                        
Query: 503  aaaagatttctactttaaaattggcaaagatttatggttggttgtttttccatttatacc 562
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812  aaaagatttctactttaaaattggcaaagatttatggttggttgtttttccatttatacc 753

                                                                        
Query: 563  gatttaatttgccaaaaatattcgatctacacaggtttccaacttatgcgtcacattaac 622
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 752  gttttaatttgccaaaaatattcgatctacacaggtttccaacttatgcgtcacattaaa 693

                                          
Query: 623  aaaggtccaactaattacactgagagagac 652
            ||||||||||||||||||||||||||||||
Sbjct: 692  aaaggtccaactaattacactgagagagac 663


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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