BAC Information

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BAC

Clone NameMSMg01-201E07
Chromosome5 (Build37)
Map Location 59,154,184 - 59,154,586
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041385
Downstream geneLOC100041396, LOC666499, EG625870, LOC100041425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-201E07.T7 (MSMg01no201_e07.b1)MSMg01-201E07.TJ (MSMg01no201_e07.g1)
ACCAG386892AG386893
length1,2401,401
length of high quality
(start - end)		417 (29 - 445)---
definitionCHROMAT_FILE: MSMg01no201_e07.b1 PHD_FILE: MSMg01no201_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:21:18 2005CHROMAT_FILE: MSMg01no201_e07.g1 PHD_FILE: MSMg01no201_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:21:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTCACTGGGCCTATAGACTCACTAAGGGAGAGGATCCGCGGAATTCA
CTATATGCACATCCCTGGTCTAGTTTGTCCATGAGTTCAGGAATCGACCT
CTCTATGTTGTTTGTCCCATCACACTACTCTACAGCAAAGTGGTCACTGA
CGCACAATCAGAATGTCACCCCCTTTAACATGTTTTAGGGAATCAAGATC
AGGTCTTCAAGCTGTATGGCCAGCACATTATGGACTGTGACATTTTCACC
ATCCTAATCATTAGAATATTTTCATTTTTCCTTGCTTTTTGTCTCATTCT
TTCTTTCTTTATTTTTTTTTAAGTCAAGTAATATATTTACATTATGCATT
TCCATCTTCCAACTTCTCACTGAAACTCCCCATCTCTGTGCTAATCTAAC
ACGGTGCTCATTTTCTTTCTCTTTAAAAAAAATAAGGAATTAGAATTTTT
ATATCCGACCAAGAAATAAAGAACACAAAAAATTAAAAACAAAGAAGAGT
ATGATGAAAACTGGTAAACACAAAGCAAAGGATAAAGTTCACAAAAACAC
CGTTGAATTTGTTACTTTGCTATGCGTCTAGGCCAACCCACATCAGAGAA
GCTTCTTTTTGCAGCAGATGGCAATGTGCACAGAGACCCACAACAGGGCA
ATGAGCACAGATGAGAGATATAGTAACATTCAGTCCTAACTGGATTGTTG
TCATCTGCCCCTACCCTCAAGGCTCAAGGATCCTAGAGCAGGTATCCTTG
AGGTAGAAGGATTTTACTAACCAGAGGTGATCAATGTCTCACTTGTTTTA
GACAGAAGAAAATTCCATTCATTGAGTCTCAGTTACCTCCTGACTTAATT
GTTTAAACAACCTTCTGCTTTATGCTCCAATATATTGACCCGCTCCCATC
AGTTGGNAATATGTTGCATACCCCTGCTTGATAATTTGCTGATTGCTTTA
ATTATTTTATCCACCCTGCCATTTGTGAGGGGGGGTCCTTATTTGGAAGT
TTAATACCCCTACTTATAGTTTCTTTCTTTTTTTTTTCAGTTTATTATTT
CACCTTTATTATAAACATNCATTTATTTTATTTTTTTTTTTTCAAACACC
CCTCATCCTATTTTCATTCTCTCTCTTTTCTTCTATTTTTTTTCTCTTTT
TTATTTTTCCCTTCTTATCTATTCTCCTCTTNCCTTTACTTACTATTCTC
TNTCTTTTTCTCCTTTGCATTCTTCCTTCTCTTCTTTCAT

TTTTTAGGATGGGAGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTTTAGGAGCAGGAATGGCAGTAGGTGGGTTG
GGGAGCAGCGTGAGGGGTGATTTTTTTCCCCCCTNNNNNNTNNTNNNNNT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TNTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTT
TTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTNTT
TTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTCTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTT
TTTTNNTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTT
TTTTNTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTNTTNTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTNTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTNTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTTTTNTTTT
TTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTT
NTTTTNNTTTTTTTTTNTNNNTTTTTNTTTTTTTTTTNTTTNNTTTTTTT
TTTTTTTTNTTTTTTTTNNNTTTTTTTTTTTTTTTTTTTTTTTTNTTNTT
TTTTTTTTTNTTTTTTTTTTTTTNTTTTTTTTTTTTTTTNTTTTTTTTTT
TNTTTTNNTTTTTTTTTNNTTTTTTTTTTTNNTTTTTTTTTTTTTTNTTT
TTTTTTTTTTNTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTNNTTTTTNN
TTNTTTNNNTTTTTTTTNNTTTTTTTTTNTTTTNNTTTTTNTNNTTTTTT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no201_e07.b1 MSMg01no201_e07.b1 CHROMAT_FILE:
MSMg01no201_e07.b1 PHD_FILE: MSMg01no201_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:21:18 2005
         (417 letters)



>mm_chr5_59154145_59154962
          Length = 818

 Score =  673 bits (348), Expect = 0.0
 Identities = 390/404 (96%), Gaps = 3/404 (0%)
 Strand = Plus / Minus

                                                                       
Query: 16  gaattc-actatatgcacatccctggtctagtttgtccatgagttcaggaatcgacctct 74
           |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gaattcaactacatgcacatccctggtctagtttgtccatgagttcaggaatcgacctct 383

                                                                       
Query: 75  ctatgttgtttgtcccatcacactactctacagcaaagtggtcactgacgcacaatcaga 134
           |||||||||||| ||||||||||||||||||||||| |||||||||| |||| ||| |||
Sbjct: 382 ctatgttgtttgacccatcacactactctacagcaacgtggtcactggcgcataatgaga 323

                                                                       
Query: 135 atgtcaccccctttaacatgttttagggaatcaagatcaggtcttcaagctgtatggcca 194
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 322 atgtcaccccctttaacatgttttagggaatcaagatcaggtcttcacgctgtatggcca 263

                                                                       
Query: 195 gcacattatggactgtgacattttcaccatcctaatcattagaatattttcatttttcct 254
           ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||
Sbjct: 262 gcacattatggactgtgacatttcccccatcctaatcattagaatattttcattttccct 203

                                                                       
Query: 255 tgctttttgtctcattctttctttctttatttttttttaagtcaagtaatatatttacat 314
           ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 202 tgctttttgtctcattctttctttcttta-ttttttttaagtcaggtaatatatttacat 144

                                                                       
Query: 315 tatgcatttccatcttccaacttctcactgaaactccccatctctgtgctaatctaacac 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 tatgcatttccatcttccaacttctcactgaaactccccatctctgtgctaatctaacac 84

                                                       
Query: 375 ggtgctcattttctttctcttt-aaaaaaaataaggaattagaa 417
           |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 83  ggtgctcattttctttctctttcaaaaaaaataaggaattagaa 40


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 818
Length adjustment: 9
Effective length of query: 408
Effective length of database: 809
Effective search space:   330072
Effective search space used:   330072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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