BAC Information

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BAC

Clone NameMSMg01-201N20
Chromosome5 (Build37)
Map Location 53,054,279 - 53,054,591
singlet/doubletsinglet
Overlap geneD5Ertd135e
Upstream geneDhx15, Sod3, Gm447, LOC100041805, Lgi2, LOC545750
Downstream genePi4k2b, Zcchc4, Anapc4, Slc34a2, 2310045A20Rik, 1810013D10Rik, LOC100041198, LOC100041911, Rbpj
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-201N20.T7 (MSMg01no201_n20.b1)MSMg01-201N20.TJ (MSMg01no201_n20.g1)
ACCAG387243AG387244
length686804
length of high quality
(start - end)
313 (374 - 686)---
definitionCHROMAT_FILE: MSMg01no201_n20.b1 PHD_FILE: MSMg01no201_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:22:23 2005CHROMAT_FILE: MSMg01no201_n20.g1 PHD_FILE: MSMg01no201_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:22:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTAATAGCCTCCTTGAAAATAAGGTATCATAATATTAAACTTATT
TAAACAAACAAATAAGACTTGTAAGTAACTTTAAATGATCTAAATTAATC
AGATGTTTTAATAGGACATAAAAATATACTAAATGAAAGGCAAAAAAAGC
AGAAAGCAGATTTTCCATGTGAACCCCACTGTATTCTAAGTCAGAATTTT
AATAGCCATCAGAAATTATATTTATATTTTTACATAGATTTCCTATTCAA
AACTCTATAATTGACCTATAAAAACAAGATAAATGATAAACCACTAAAAG
ATTATTTTATCCCACCCCCCCATATACTAGCTTTACATCTCCATTTTCCT
AAGCCTCACCAACCAAAAACATTCATTACATCATACAAATAAGAAGTAAC
AAATGACAATTTGCTGACTGCTAAGTCCTCCTGACTCTTTGTAGCAGGTT
TACATGTAACCAATGCACACCACACACTGAGACTGAAGTCAAGCTCACCA
GAGAGAGATGACTCCTCTAATACAAACACTCACGAGCTGTCTGGGACAGC
TTTACTAGAAGTTTACTTCTAGTCCATTCAAATGTTCTAGATATTAAAAT
TATTAAAGAATACCATTTCTTTCATATTGTGATAGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTTGTAGATCAGGNTGGCCTCG
AANTCGGAGATCCGTCTGCCCCTGCCTCCCAAGTGATGGGATTAAAGGCG
TGCGCCTCCACGCCCGGCGATACAAGTCGTATCTTAGAAACGAATTTTAT
AATGTGCCCTTATTCCCTTCGCTCTTTTATCCTTATTTTGAAGCTTTTTT
TTTTTTTTCCCTAATCATCCCCTACATTTTTTCTACGTCCCCTTTTGTCC
CGTACGCCGCAACTTTTTTTTTTTTTTTTCCCCCTTTTTCCGAGCCGAGG
GAAAAATTTTTTTGNGTAATTCCGAGGAACGAAAGCCCTATGGGAGGAGT
TGGTTTTATTTTTATTTGTTGTGGTTTTCCCCCCCCCCTTAAAAAAAAAA
AATTTGCGGGGGGGGGGGGGGGGTGGTGCCTCTTCTTCTTCTTTTCTTTT
ATTATCCTCGTCTTTACCATACTCACCTATTGCACATATGACACTGATTT
TAATAATTCGCTACGATTCTCTACATAATCGATATAGTATTCGTATTTCA
TTTCCCCTCGTTTTTGTTTTTTATCTTTCCCCATTTTTTTCCACATTTAT
ACCTACACCCTATTTTTTTTATTTTTTCTTCCCTCCCGCTGCTCTTTGGA
CCACTTATTTTTTTTTTTTTTTTCTTGTTCTTTGCTGTCCACTCCCATAT
TCCTCCATTGTTGTTATTTATTTCCTCATATTTCACCGCCCTCGTCTTTC
TCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no201_n20.b1 MSMg01no201_n20.b1 CHROMAT_FILE:
MSMg01no201_n20.b1 PHD_FILE: MSMg01no201_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:23 2005
         (313 letters)



>mm_chr5_53054079_53054791
          Length = 713

 Score =  582 bits (301), Expect = e-171
 Identities = 310/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atactagctttacatctccattttcctaagcctcaccaaccaaaaacattcattacatca 60
           |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 201 atactagctttacatctccattttcctaagcctcactaatcaaaaacattcattacatca 260

                                                                       
Query: 61  tacaaataagaagtaacaaatgacaatttgctgactgctaagtcctcctgactctttgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacaaataagaagtaacaaatgacaatttgctgactgctaagtcctcctgactctttgta 320

                                                                       
Query: 121 gcaggtttacatgtaaccaatgcacaccacacactgagactgaagtcaagctcaccagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 gcaggtttacatgtaaccaatgcacaccacacactgagactgaagtcaagctccccagag 380

                                                                       
Query: 181 agagatgactcctctaatacaaacactcacgagctgtctgggacagctttactagaagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagatgactcctctaatacaaacactcacgagctgtctgggacagctttactagaagtt 440

                                                                       
Query: 241 tacttctagtccattcaaatgttctagatattaaaattattaaagaataccatttctttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacttctagtccattcaaatgttctagatattaaaattattaaagaataccatttctttc 500

                        
Query: 301 atattgtgatagg 313
           |||||||||||||
Sbjct: 501 atattgtgatagg 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)