BAC Information

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BAC

Clone NameMSMg01-203F19
Chromosome5 (Build37)
Map Location 130,297,670 - 130,297,956
singlet/doubletsinglet
Overlap geneCct6a
Upstream geneRimbp2, Stx2, Ran, LOC100040441, Gpr133, LOC100039355, Sfrs8, Mmp17, EG620248, Zfp11, 1700016K13Rik, Mrps17, Gbas, Psph
Downstream geneLOC100038887, Sumf2, Phkg1, Chchd2, 2410018M08Rik, 4930579G22Rik, Vkorc1l1, Gusb, Asl, Crcp, Tpst1, Kctd7, Rabgef1, 0610007L01Rik, EG625540, Sbds, Tyw1, A330070K13Rik, Caln1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203F19.T7 (MSMg01no203_f19.b1)MSMg01-203F19.TJ (MSMg01no203_f19.g1)
ACCAG388160
length750774
length of high quality
(start - end)
---287 (74 - 360)
definitionCHROMAT_FILE: MSMg01no203_f19.b1 PHD_FILE: MSMg01no203_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:29 2005CHROMAT_FILE: MSMg01no203_f19.g1 PHD_FILE: MSMg01no203_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAATCCGCGGAC
ATCAATACCTTTTCCGCTAACAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTCCGAAATTCTGGGTTTTTTTACAAGAGTGCAGAAG
AGAGAGAAAAACTAGTAAAGGCTGCAAGAAAATTCATTGAAGATAGAGTT
AAAAAAATCATAGAGCTGAAAAAGAAAGTCTGTGGTGACTCAGATAAAGG
ATTTGTCGTTATTAATCAAAAGGTAAGAACTTAAAATTGTGAATTAGTCT
TATTCCTTTTTAAGGTGAAGGCTGCTGAGAAATGTTTGTCTTTATTCAGG
GGATTGACCCCTTTTCCTTGGATTTTTTTGTTAAAGAAGGGATCGTAGCT
CTGCGCAGAGCCTATATTATAAACATGGAGAGGTGAGTGAGGCCAACTGA
GAGTTTGCACGGGATTTCCCCCCACCCTCTTCGTACTTCTGCTTGCTTTT
TCATTTTACTAGCATGTATGAGTTGAACAGAATCATTGGGTTGTTCTTCT
TTTCCTCTCTCTTCCCCCTTCTCCCTCTTTATCATCTTTTATCTCCTTTA
TTTACTATTTATTTTCCTCTATCTATTTCTCTTCCCCTTTCTCTTTCACC
ACCATATCTTTATTCCTCTTCTCTCTATTTTTTTTCTTATTTCCCTCCTC
TTCTCACCTTTTTATCCCTATCTCCTTTTTTTTTTTTCTATTCTTTTTCG
ACCACTTTTATTTTTCATTTTTTCATTTTCTTTTTCAATCTAATACTTAT
TTTACCATTCTACCTTTTCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_f19.g1 MSMg01no203_f19.g1 CHROMAT_FILE:
MSMg01no203_f19.g1 PHD_FILE: MSMg01no203_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:29 2005
         (287 letters)



>mm_chr5_130297470_130298156
          Length = 687

 Score =  493 bits (255), Expect = e-144
 Identities = 279/293 (95%), Gaps = 12/293 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgggtttttttacaagagtgcagaagagagagaaaaactagtaaaggctgcaagaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 ctgggtttttttacaagagtgcagaagagagagaaaaactagtaaaggctgaaagaaaat 260

                                                                       
Query: 61  tcattgaagatagagttaaaaaaatcatagagctgaaaaagaaagtctgtggtgactcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcattgaagatagagttaaaaaaatcatagagctgaaaaagaaagtctgtggtgactcag 320

                                                                       
Query: 121 ataaaggatttgtcgttattaatcaaaaggtaagaacttaaaattgtgaattagtcttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataaaggatttgtcgttattaatcaaaaggtaagaacttaaaattgtgaattagtcttat 380

                                                                       
Query: 181 tcctttttaaggtgaaggctgctgagaaatgtttgtctttattcaggggattgacccctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctttttaaggtgaaggctgctgagaaatgtttgtctttattcaggggattgacccctt 440

                                                                
Query: 241 ttccttggatttttttg---tt---aaagaagggatcgtagctctgcgcagag 287
           |||||| |||      |   ||   ||||||||||||||||||||||||||||
Sbjct: 441 ttccttagat------gcccttgcgaaagaagggatcgtagctctgcgcagag 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)