BAC Information

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BAC

Clone NameMSMg01-203L12
Chromosome5 (Build37)
Map Location 91,940,904 - 91,941,530
singlet/doubletsinglet
Overlap genenone
Upstream geneAfm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg, Btc
Downstream gene9130213B05Rik, EG665860, LOC665864, LOC100040506, Ppia-ps5_892.1, Rchy1, Thap6, Gm1045, Cdkl2, LOC100040574, G3bp2, Vdp, LOC100040605, U90926, Ppef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228, Art3, Nup54, Scarb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203L12.T7 (MSMg01no203_l12.b1)MSMg01-203L12.TJ (MSMg01no203_l12.g1)
ACCAG388378AG388379
length752750
length of high quality
(start - end)		631 (46 - 676)338 (331 - 668)
definitionCHROMAT_FILE: MSMg01no203_l12.b1 PHD_FILE: MSMg01no203_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:58 2005CHROMAT_FILE: MSMg01no203_l12.g1 PHD_FILE: MSMg01no203_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGCCTCCTGTGCGAAAGCTACTCATTCCCCAAGCATCTCTCATG
TCTAGGTTGTCTGTGCATGGTCTTAAATTTTTCTCCTGTTAATCTGCCTT
TCATATGAGGGTGTCCAGGCTAAGCTTATATGACAAAGTCAAAATTGCTT
TTCCTCTCATATGATACTGGCATCCTAAATTTGAAAATCAGTTAAGATAC
TTGGAGTTGAAAGAAGTTGAAGGATGCTAAGATATACAGTACCAGGGAAC
GTGTCCTCCTCAGTGGGGTCAGGGATGAAACATGCCTGCATCCGTTTGTT
TATGCCTTTATATCAAGAGCTGGTTTCTTCAGAGACTTCTCTTGGTCCTT
TTATAGTGTTCCTGAGGCACAAAATCTGAGAAAACCTGCCTTTTACTGAC
TTCATTTCTTTTTGATCATTGTTAAAATGAATTTTTAGTGTTATGGACTT
TCAACATTTTACAAAAACATTGCCCTTGACTGACTTAGTTTTTGACATCT
GAATGTGTTGTACTTCATGGACACTGTTAGGTGAGATATGCCAGACCCCA
CAGAAATATTATTTCTGGAACGATATTCTCATGGTTGAGGAAAGAGAAAT
CTGGGCTATAGAGCTGTGTGAGGTGGTGTAACAAGTGACTAGGGGTGAGG
TGCTGGTCTTTCTACCTGTTTAAACAAGGATCTCATTTCCCTTGACACCT
GT

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAAAATCCTACAGCTGATTAACAACTTCAGCAAA
GTAGCTGGATATAAAATTATCTGACAAGAAATCAGTAGCCCTGTTTATAC
AACTGATAAACTGATAAACCATCTGAGAAAGAAATTGGGGAAACAATATT
CTTCACAATAGCCACAAACAATATAAAATATCTTGGTGTGATTCTAACCA
AGCAAGTGGGAGATCTATGTAACAAGAACTTCAAGTTCCTGAAGAAAGAA
ATGTAAGAAGAACTCAGAATATGTATAGATCTCTCATGCTCATGGATTGG
AAGGATTATCATAGTGAGAATGGCCATCTTTCCAAAAGCAATCTATAGAT
TCAATGCAGTTCCCATAAAAACTCCAACACAATTTTCATAGACCTTGAAA
GAGCAATTCTCAATTTCATATGAAAAAAAAAAGAGAGAAAACTAGGATAG
CCAAAACAATCCTGAACAATAAAAGAACCTCTGGAGGAATCATCCTCCCT
GATAAAAACAAACAAAACAAAAACAAAACAAAACATGGTATTGGTACAGA
AACAGACATGTTAATCAATGAAATAGAAGTAAAAGAGCCAGACATAAACC
CACACAACTATGGACTCTTGATTTTTGACAAAGAAGCCCAAAACCATACA
ATGGNAAAGAAGATAGAATCCTCTACAAATAGTGCTGGTCTAACTAGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_l12.b1 MSMg01no203_l12.b1 CHROMAT_FILE:
MSMg01no203_l12.b1 PHD_FILE: MSMg01no203_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:58 2005
         (631 letters)



>mm_chr5_91940538_91941568
          Length = 1031

 Score = 1145 bits (592), Expect = 0.0
 Identities = 619/628 (98%), Gaps = 2/628 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaagcctcctgtgcgaaagctactcattccccaagcatctctcatgtctaggttg 64
           |||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 993 gaattcaagcctcctgtgtgaaagctactcattccccgagcatctctcatgtctacgttg 934

                                                                       
Query: 65  tctgtgcatggtcttaaatttttctcctgttaatctgcctttcatatga-gggtgtccag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| 
Sbjct: 933 tctgtgcatggtcttaaatttttctcctgttaatctgcctttcatatgaggggt-tccaa 875

                                                                       
Query: 124 gctaagcttatatgacaaagtcaaaattgcttttcctctcatatgatactggcatcctaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 gctaagcttatatgacaaagtcaaaattgcttttcctctcatatgatactggcatcctaa 815

                                                                       
Query: 184 atttgaaaatcagttaagatacttggagttgaaagaagttgaaggatgctaagatataca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 atttgaaaatcagttaagatacttggagttgaaagaagttgaaggatgctaagatataca 755

                                                                       
Query: 244 gtaccagggaacgtgtcctcctcagtggggtcagggatgaaacatgcctgcatccgtttg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 gtaccagggaacgtgtcctcctcagtggggtcagggatgaaacatgcctgcatccgtttg 695

                                                                       
Query: 304 tttatgcctttatatcaagagctggtttcttcagagacttctcttggtccttttatagtg 363
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 694 tttatgcctttatatcaagagctgatttcttcagagacttctcttggtccttttatagtg 635

                                                                       
Query: 364 ttcctgaggcacaaaatctgagaaaacctgccttttactgacttcatttctttttgatca 423
           ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 ttcctgagggataaaatctgagaaaacctgccttttactgacttcatttctttttgatca 575

                                                                       
Query: 424 ttgttaaaatgaatttttagtgttatggactttcaacattttacaaaaacattgcccttg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ttgttaaaatgaatttttagtgttatggactttcaacattttacaaaaacattgcccttg 515

                                                                       
Query: 484 actgacttagtttttgacatctgaatgtgttgtacttcatggacactgttaggtgagata 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 actgacttagtttttgacatctgaatgtgttgtacttcatggacactgttaggtgagata 455

                                                                       
Query: 544 tgccagaccccacagaaatattatttctggaacgatattctcatggttgaggaaagagaa 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tgccagaccccacagaaatattatttctggaacgatattctcatggttgaggaaagagaa 395

                                       
Query: 604 atctgggctatagagctgtgtgaggtgg 631
           ||||||||||||||||||||||||||||
Sbjct: 394 atctgggctatagagctgtgtgaggtgg 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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