BAC Information

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BAC

Clone NameMSMg01-203O14
Chromosome5 (Build37)
Map Location 61,235,163 - 61,235,478
singlet/doubletsinglet
Overlap geneLOC666597
Upstream geneLOC546866, Cbfa2t2-ps1, LOC100041498
Downstream geneEG666610, LOC100041524, G6pd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203O14.T7 (MSMg01no203_o14.b1)MSMg01-203O14.TJ (MSMg01no203_o14.g1)
ACCAG388492AG388493
length750752
length of high quality
(start - end)
321 (47 - 367)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no203_o14.b1 PHD_FILE: MSMg01no203_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:15 2005CHROMAT_FILE: MSMg01no203_o14.g1 PHD_FILE: MSMg01no203_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAATTACAGTGACATGGAGAAGACTTTTCCTGCCAAAACAAATGT
AAATAAAAATAAAAAAATAAGCATTGCTTGAGAAGTTGTTATAACTCTGT
TCAACAGATGTTTATTTGTCTCTTCTGTTTTAGCTAACTACAAGTGTATG
CAATATTTCTGTCATTCTGGGAAGGGTTTGCTTTTATTATCTATCCATCT
CTCTCTACCATAAACTAAAGCAAGACAGTTCTTAAATCTTATTTCCTTAC
CTTGCTTAAAAAGATTATATATATATATATATATATATATATATATATAT
ATATATATATATATATTTTTTTACCCCCCCCCCCCCATATATATCTTTCT
TAAAGTCTGTTTTTTCCACCCCCCCTTTTAGAAAGAAAGATATAGATAGT
TCGCCCCTTTTTTCGTACGAGTTTTCGTGAGTTCGCCCTCTTGTGTTTTT
TTATCTCCCCCCATACACCTATATCCCTTTGTCCGCTTGTGCGAGCTACC
CCCCTCCATCCCTCTCTATACATTTATATATATATATTTATCCACACCTC
CTTATCCTTCTCTCTCCTTTTCTTTATTTTTCCCCGCTTTTCTTTCCCTT
CTATTATTTTCTCCCTCGTTGTGTTTTCTCCCCTCCTTCTACTTTTTTTC
CCTTTTTTTCTTTTTTTCCCCCCCCCTTCTTTCCTCTCTTTCTTCTTTTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTAAGAATGTTACCTATTCAGTA
ACACTCAAATTCACTTCTAGTAGAGACTGTAAAATTAATTAGGCATTACT
ATTTACTTGAATAGAGCTAGAAAGCTCAGGGCTAGTCTACATAGTAATTA
CTTAGGACAATAGCCGAGTCACACCCAAACACATGAATACACAATGGCCT
AGGAAATAGGTGGTTGTAGTATTATTCATGAAAGGGTTAGTAGAACAGAA
TTCCCCTGCTTCACTAGGCGCGGAGGAATAGCATAATCAGGTATTTACAA
AAGGACCCCTGGTGGTGTTCTTCCCCCCACACTAGCATTGTATCAGAACA
TTCACCTGGCTTCTGCCCCCCCCCGATCTTATTTAGGGTTTTCCTATTTT
CAGTTGTTAACAAGGCCTGGCTCCCATCATCTTTTTATGTATGCATTCTC
TTTGTTTCGTGCTAAGAACCAGTACCTTGGCCGACGTATTCTCCTAGCCT
TCCTGCCTTCTTCTGCGTTTTAAGCCTGCCTCTTGTCTATAGAATTCCCT
CCCCATTTTCCCCTTCCTTGTTGTTGCGTCCTGTCCGTTTGCCCACCTTT
CTTCTGTTATATCCTTGTCCTATTCGCTCCCTCCCTCTTTCCCTTCCTTT
TCCTTTTCTCCCCCCTATTTACCCCCTTCCCTTGTTCTCCTATTTTCCCC
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_o14.b1 MSMg01no203_o14.b1 CHROMAT_FILE:
MSMg01no203_o14.b1 PHD_FILE: MSMg01no203_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:15 2005
         (321 letters)



>mm_chr5_61234959_61235679
          Length = 721

 Score =  580 bits (300), Expect = e-170
 Identities = 312/316 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaattacagtgacatggagaagacttttcctgccaaaacaaatgtaaataaaaat 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaattacagtgagatggagaagacttttcctgccaaaacaaatgtaaataaaaat 264

                                                                       
Query: 65  aaaaaaataagcattgcttgagaagttgttataactctgttcaacagatgtttatttgtc 124
           |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 265 aaaaaaataagcattgtttgagaagttgttataactctgttcaacagatgcttatttgtc 324

                                                                       
Query: 125 tcttctgttttagctaactacaagtgtatgcaatatttctgtcattctgggaagggtttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcttctgttttagctaactacaagtgtatgcaatatttctgtcattctgggaagggtttg 384

                                                                       
Query: 185 cttttattatctatccatctctctctaccataaactaaagcaagacagttcttaaatctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttttattatctatccatctctctctaccataaactaaagcaagacagttcttaaatctt 444

                                                                       
Query: 245 atttccttaccttgcttaaaaagattatatatatatatatatatatatatatatatatat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atttccttaccttgcttaaaaagattatatatatatatatatatatatatatatatatat 504

                           
Query: 305 atatatatatatatat 320
           ||||| ||||||||||
Sbjct: 505 atatacatatatatat 520



 Score = 91.6 bits (47), Expect = 6e-23
 Identities = 50/51 (98%)
 Strand = Plus / Minus

                                                              
Query: 270 tatatatatatatatatatatatatatatatatatatatatatatatatat 320
           ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tatatatatatgtatatatatatatatatatatatatatatatatatatat 471



 Score = 91.6 bits (47), Expect = 6e-23
 Identities = 50/51 (98%)
 Strand = Plus / Minus

                                                              
Query: 270 tatatatatatatatatatatatatatatatatatatatatatatatatat 320
           ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 523 tatatatatatatgtatatatatatatatatatatatatatatatatatat 473



 Score = 91.6 bits (47), Expect = 6e-23
 Identities = 50/51 (98%)
 Strand = Plus / Minus

                                                              
Query: 270 tatatatatatatatatatatatatatatatatatatatatatatatatat 320
           ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 525 tatatatatatatatgtatatatatatatatatatatatatatatatatat 475



 Score = 91.6 bits (47), Expect = 6e-23
 Identities = 50/51 (98%)
 Strand = Plus / Minus

                                                              
Query: 270 tatatatatatatatatatatatatatatatatatatatatatatatatat 320
           ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 527 tatatatatatatatatgtatatatatatatatatatatatatatatatat 477



 Score = 91.6 bits (47), Expect = 6e-23
 Identities = 50/51 (98%)
 Strand = Plus / Minus

                                                              
Query: 270 tatatatatatatatatatatatatatatatatatatatatatatatatat 320
           ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 529 tatatatatatatatatatgtatatatatatatatatatatatatatatat 479



 Score = 91.6 bits (47), Expect = 6e-23
 Identities = 50/51 (98%)
 Strand = Plus / Minus

                                                              
Query: 270 tatatatatatatatatatatatatatatatatatatatatatatatatat 320
           ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 531 tatatatatatatatatatatgtatatatatatatatatatatatatatat 481



 Score = 91.6 bits (47), Expect = 6e-23
 Identities = 50/51 (98%)
 Strand = Plus / Minus

                                                              
Query: 270 tatatatatatatatatatatatatatatatatatatatatatatatatat 320
           ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 539 tatatatatatatatatatatatatatatgtatatatatatatatatatat 489



 Score = 91.6 bits (47), Expect = 6e-23
 Identities = 50/51 (98%)
 Strand = Plus / Minus

                                                              
Query: 270 tatatatatatatatatatatatatatatatatatatatatatatatatat 320
           ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 541 tatatatatatatatatatatatatatatatgtatatatatatatatatat 491



 Score = 89.7 bits (46), Expect = 2e-22
 Identities = 49/50 (98%)
 Strand = Plus / Minus

                                                             
Query: 270 tatatatatatatatatatatatatatatatatatatatatatatatata 319
           ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tatatatatgtatatatatatatatatatatatatatatatatatatata 470



 Score = 89.7 bits (46), Expect = 2e-22
 Identities = 49/50 (98%)
 Strand = Plus / Minus

                                                             
Query: 271 atatatatatatatatatatatatatatatatatatatatatatatatat 320
           |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 542 atatatatatatatatatatatatatatatatgtatatatatatatatat 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 100
Number of extensions: 64
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 19
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)